Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3L entry

There are 6 chains in PDB entry 5W3L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 16TYR 289
B
 GLY 1GLU 236
C
 GLY 8GLN 262
D
 ILE 29ASN 68
E
 ALA 1ALA 116
G
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5W3L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
66 71Right-handed alpha
Helix 4
AA4
A
109 117Right-handed alpha
Helix 5
AA5
A
165 170Right-handed 310
Helix 6
AA6
B
42 47Right-handed alpha
Helix 7
AA7
B
63 66Right-handed 310
Helix 8
AA8
B
89 93Right-handed 310
Helix 9
AA9
B
95 102Right-handed alpha
Helix 10
AB1
C
35 37Right-handed 310
Helix 11
AB2
C
56 61Right-handed alpha
Helix 12
AB3
C
83 87Right-handed 310
Helix 13
AB4
C
89 98Right-handed alpha
Helix 14
AB5
C
143 148Right-handed alpha
Helix 15
AB6
C
168 172Right-handed 310
Helix 16
AB7
C
177 184Right-handed 310
Helix 17
AB8
D
49 54Right-handed alpha
Helix 18
AB9
E
86 90Right-handed 310
Back to top of page

There are 18 sheets in PDB entry 5W3L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
56 57anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
205 213anti-parallel
Strand 5
B
51 52anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 35first strand
Strand 2
B
160 165anti-parallel
Strand 3
B
111 117anti-parallel
Strand 4
B
205 213anti-parallel
Strand 5
B
68 71anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 84first strand
Strand 2
A
237 255anti-parallel
Strand 3
A
119 135anti-parallel
Strand 4
A
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
119 135anti-parallel
Strand 3
A
237 255anti-parallel
Strand 4
B
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
147 153anti-parallel
Strand 4
A
175 179anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 84first strand
Strand 2
B
186 196anti-parallel
Strand 3
B
124 132anti-parallel
Strand 4
B
149 154anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 175first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
218 222anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 18first strand
Strand 2
C
21 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
196 201parallel
Strand 3
C
99 111anti-parallel
Strand 4
C
238 254anti-parallel
Strand 5
C
64 65anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 33first strand
Strand 2
C
196 201parallel
Strand 3
C
99 111anti-parallel
Strand 4
C
238 254anti-parallel
Strand 5
C
69 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 155first strand
Strand 2
C
78 82anti-parallel
Strand 3
C
218 224anti-parallel
Strand 4
C
121 128anti-parallel
Strand 5
C
186 190anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 7first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
77 83anti-parallel
Strand 4
E
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
110 114parallel
Strand 3
E
91 95anti-parallel
Strand 4
E
34 39anti-parallel
Strand 5
E
46 51anti-parallel
Strand 6
E
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 99first strand
Strand 2
E
102 104anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
4 7first strand
Strand 2
G
19 25anti-parallel
Strand 3
G
70 75anti-parallel
Strand 4
G
62 67anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 13first strand
Strand 2
G
103 106parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
53 54first strand
Strand 2
G
45 49anti-parallel
Strand 3
G
33 38anti-parallel
Strand 4
G
85 90anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il