Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3V entry

There are 11 chains in PDB entry 5W3V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 186
B
 ALA 2GLN 72
B
 TYR 74ARG 183
C
 ALA 2GLN 72
C
 TYR 74VAL 185
D
 ALA 2GLN 72
D
 TYR 74SER 184
E
 A 1 A 10
F
 A 1 C 10
G
 A 1 C 10
H
 A 1 A 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5W3V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 14Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
85 99Right-handed alpha
Helix 4
AA4
A
116 128Right-handed alpha
Helix 5
AA5
A
137 149Right-handed alpha
Helix 6
AA6
A
158 185Right-handed alpha
Helix 7
AA7
B
5 13Right-handed alpha
Helix 8
AA8
B
54 66Right-handed alpha
Helix 9
AA9
B
85 99Right-handed alpha
Helix 10
AB1
B
116 128Right-handed alpha
Helix 11
AB2
B
137 149Right-handed alpha
Helix 12
AB3
B
158 181Right-handed alpha
Helix 13
AB4
C
5 14Right-handed alpha
Helix 14
AB5
C
54 66Right-handed alpha
Helix 15
AB6
C
85 99Right-handed alpha
Helix 16
AB7
C
116 128Right-handed alpha
Helix 17
AB8
C
137 149Right-handed alpha
Helix 18
AB9
C
158 183Right-handed alpha
Helix 19
AC1
D
5 13Right-handed alpha
Helix 20
AC2
D
54 66Right-handed alpha
Helix 21
AC3
D
85 99Right-handed alpha
Helix 22
AC4
D
116 128Right-handed alpha
Helix 23
AC5
D
137 149Right-handed alpha
Helix 24
AC6
D
158 184Right-handed alpha
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There are 4 sheets in PDB entry 5W3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 49first strand
Strand 2
A
28 36anti-parallel
Strand 3
A
74 82anti-parallel
Strand 4
A
102 110parallel
Strand 5
A
133 135parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
29 36anti-parallel
Strand 3
B
74 82anti-parallel
Strand 4
B
102 110parallel
Strand 5
B
133 135parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
43 49first strand
Strand 2
C
28 36anti-parallel
Strand 3
C
74 82anti-parallel
Strand 4
C
102 110parallel
Strand 5
C
133 135parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
43 48first strand
Strand 2
D
29 36anti-parallel
Strand 3
D
74 82anti-parallel
Strand 4
D
102 110parallel
Strand 5
D
133 135parallel
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