Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W3X entry

There are 4 chains in PDB entry 5W3X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 152ASP 486
B
 ILE 1207THR 1273
C
 ALA 145THR 487
D
 LYS 1197THR 1273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5W3X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
154 179Right-handed alpha
Helix 2
AA2
A
189 209Right-handed alpha
Helix 3
AA3
A
220 224Right-handed 310
Helix 4
AA4
A
239 246Right-handed alpha
Helix 5
AA5
A
288 302Right-handed alpha
Helix 6
AA6
A
320 335Right-handed alpha
Helix 7
AA7
A
335 349Right-handed alpha
Helix 8
AA8
A
351 354Right-handed 310
Helix 9
AA9
A
378 382Right-handed 310
Helix 10
AB1
A
387 398Right-handed alpha
Helix 11
AB2
A
399 403Right-handed 310
Helix 12
AB3
A
412 420Right-handed alpha
Helix 13
AB4
A
448 467Right-handed alpha
Helix 14
AB5
A
469 485Right-handed alpha
Helix 15
AB6
B
1237 1242Right-handed alpha
Helix 16
AB7
C
154 179Right-handed alpha
Helix 17
AB8
C
189 209Right-handed alpha
Helix 18
AB9
C
220 224Right-handed 310
Helix 19
AC1
C
239 246Right-handed alpha
Helix 20
AC2
C
288 302Right-handed alpha
Helix 21
AC3
C
320 335Right-handed alpha
Helix 22
AC4
C
335 349Right-handed alpha
Helix 23
AC5
C
351 354Right-handed 310
Helix 24
AC6
C
378 383Right-handed 310
Helix 25
AC7
C
387 398Right-handed alpha
Helix 26
AC8
C
399 404Right-handed 310
Helix 27
AC9
C
412 420Right-handed alpha
Helix 28
AD1
C
448 468Right-handed alpha
Helix 29
AD2
C
469 485Right-handed alpha
Helix 30
AD3
D
1237 1242Right-handed alpha
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There are 6 sheets in PDB entry 5W3X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
214 218parallel
Strand 3
A
249 256parallel
Strand 4
A
261 269anti-parallel
Strand 5
A
272 279anti-parallel
Strand 6
A
306 311parallel
Strand 7
A
368 375parallel
Strand 8
A
356 361anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 427first strand
Strand 2
A
441 447anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1215 1221first strand
Strand 2
B
1230 1235anti-parallel
Strand 3
B
1246 1251anti-parallel
Strand 4
B
1259 1264anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 238first strand
Strand 2
C
214 218parallel
Strand 3
C
249 256parallel
Strand 4
C
261 269anti-parallel
Strand 5
C
272 279anti-parallel
Strand 6
C
306 311parallel
Strand 7
C
368 375parallel
Strand 8
C
356 361anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
421 427first strand
Strand 2
C
441 447anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
1198 1201first strand
Strand 2
D
1259 1264anti-parallel
Strand 3
D
1246 1251anti-parallel
Strand 4
D
1230 1235anti-parallel
Strand 5
D
1215 1221anti-parallel
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