Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W3Y entry

There are 4 chains in PDB entry 5W3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 143	ASP 486
B	PRO 144	ASP 486
C	PRO 144	ASN 488
D	PRO 144	LEU 485

There are 59 helices in PDB entry 5W3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	148	Right-handed 310
Helix 2	AA2	A	151	179	Right-handed alpha
Helix 3	AA3	A	189	209	Right-handed alpha
Helix 4	AA4	A	220	224	Right-handed 310
Helix 5	AA5	A	239	246	Right-handed alpha
Helix 6	AA6	A	288	301	Right-handed alpha
Helix 7	AA7	A	320	335	Right-handed alpha
Helix 8	AA8	A	335	349	Right-handed alpha
Helix 9	AA9	A	351	354	Right-handed 310
Helix 10	AB1	A	378	383	Right-handed 310
Helix 11	AB2	A	387	398	Right-handed alpha
Helix 12	AB3	A	399	404	Right-handed 310
Helix 13	AB4	A	412	420	Right-handed alpha
Helix 14	AB5	A	448	468	Right-handed alpha
Helix 15	AB6	A	469	483	Right-handed alpha
Helix 16	AB7	B	144	148	Right-handed 310
Helix 17	AB8	B	151	179	Right-handed alpha
Helix 18	AB9	B	189	209	Right-handed alpha
Helix 19	AC1	B	220	224	Right-handed 310
Helix 20	AC2	B	239	246	Right-handed alpha
Helix 21	AC3	B	288	302	Right-handed alpha
Helix 22	AC4	B	320	335	Right-handed alpha
Helix 23	AC5	B	335	344	Right-handed alpha
Helix 24	AC6	B	378	383	Right-handed alpha
Helix 25	AC7	B	387	398	Right-handed alpha
Helix 26	AC8	B	399	403	Right-handed 310
Helix 27	AC9	B	412	420	Right-handed alpha
Helix 28	AD1	B	448	468	Right-handed alpha
Helix 29	AD2	B	469	483	Right-handed alpha
Helix 30	AD3	C	145	149	Right-handed alpha
Helix 31	AD4	C	151	179	Right-handed alpha
Helix 32	AD5	C	189	209	Right-handed alpha
Helix 33	AD6	C	220	224	Right-handed 310
Helix 34	AD7	C	239	246	Right-handed alpha
Helix 35	AD8	C	288	302	Right-handed alpha
Helix 36	AD9	C	320	335	Right-handed alpha
Helix 37	AE1	C	335	349	Right-handed alpha
Helix 38	AE2	C	351	354	Right-handed 310
Helix 39	AE3	C	378	383	Right-handed alpha
Helix 40	AE4	C	387	398	Right-handed alpha
Helix 41	AE5	C	399	404	Right-handed 310
Helix 42	AE6	C	412	420	Right-handed alpha
Helix 43	AE7	C	448	468	Right-handed alpha
Helix 44	AE8	C	469	483	Right-handed alpha
Helix 45	AE9	D	145	149	Right-handed alpha
Helix 46	AF1	D	151	179	Right-handed alpha
Helix 47	AF2	D	189	209	Right-handed alpha
Helix 48	AF3	D	220	224	Right-handed 310
Helix 49	AF4	D	239	246	Right-handed alpha
Helix 50	AF5	D	288	301	Right-handed alpha
Helix 51	AF6	D	320	335	Right-handed alpha
Helix 52	AF7	D	335	349	Right-handed alpha
Helix 53	AF8	D	351	354	Right-handed 310
Helix 54	AF9	D	378	383	Right-handed 310
Helix 55	AG1	D	387	398	Right-handed alpha
Helix 56	AG2	D	399	403	Right-handed 310
Helix 57	AG3	D	412	420	Right-handed alpha
Helix 58	AG4	D	448	468	Right-handed alpha
Helix 59	AG5	D	469	483	Right-handed alpha

There are 8 sheets in PDB entry 5W3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	238	first strand
Strand 2	A	214	218	parallel
Strand 3	A	249	256	parallel
Strand 4	A	261	269	anti-parallel
Strand 5	A	272	279	anti-parallel
Strand 6	A	306	311	parallel
Strand 7	A	368	375	parallel
Strand 8	A	356	361	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	427	first strand
Strand 2	A	441	447	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	238	first strand
Strand 2	B	214	218	parallel
Strand 3	B	251	256	parallel
Strand 4	B	261	266	anti-parallel
Strand 5	B	274	279	anti-parallel
Strand 6	B	306	311	parallel
Strand 7	B	368	375	parallel
Strand 8	B	356	361	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	427	first strand
Strand 2	B	441	447	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	214	218	parallel
Strand 3	C	249	256	parallel
Strand 4	C	261	269	anti-parallel
Strand 5	C	272	279	anti-parallel
Strand 6	C	306	311	parallel
Strand 7	C	368	375	parallel
Strand 8	C	356	361	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	427	first strand
Strand 2	C	441	447	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	238	first strand
Strand 2	D	214	218	parallel
Strand 3	D	249	256	parallel
Strand 4	D	261	269	anti-parallel
Strand 5	D	272	279	anti-parallel
Strand 6	D	306	311	parallel
Strand 7	D	368	375	parallel
Strand 8	D	356	361	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	427	first strand
Strand 2	D	441	447	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W3Y