Analysis of interatomic Contacts of Structural Units in PDB entry:
5W40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W40 entry

There are 8 chains in PDB entry 5W40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 143ASP 320
A
 ARG 322ASP 486
B
 PRO 144ASP 320
B
 ARG 322ASP 486
C
 PRO 144ASP 320
C
 ARG 322ASP 486
D
 GLY 146ASP 320
D
 ARG 322THR 487
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5W40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
151 179Right-handed alpha
Helix 2
AA2
A
189 209Right-handed alpha
Helix 3
AA3
A
220 224Right-handed 310
Helix 4
AA4
A
239 246Right-handed alpha
Helix 5
AA5
A
288 302Right-handed alpha
Helix 6
AA6
A
320 335Right-handed alpha
Helix 7
AA7
A
335 348Right-handed alpha
Helix 8
AA8
A
351 354Right-handed 310
Helix 9
AA9
A
378 382Right-handed 310
Helix 10
AB1
A
387 398Right-handed alpha
Helix 11
AB2
A
399 402Right-handed 310
Helix 12
AB3
A
412 420Right-handed alpha
Helix 13
AB4
A
448 467Right-handed alpha
Helix 14
AB5
A
469 482Right-handed alpha
Helix 15
AB6
A
483 485Right-handed 310
Helix 16
AB7
B
144 149Right-handed 310
Helix 17
AB8
B
151 179Right-handed alpha
Helix 18
AB9
B
189 209Right-handed alpha
Helix 19
AC1
B
220 224Right-handed 310
Helix 20
AC2
B
239 246Right-handed alpha
Helix 21
AC3
B
288 302Right-handed alpha
Helix 22
AC4
B
320 335Right-handed alpha
Helix 23
AC5
B
335 348Right-handed alpha
Helix 24
AC6
B
351 354Right-handed 310
Helix 25
AC7
B
378 382Right-handed 310
Helix 26
AC8
B
387 398Right-handed alpha
Helix 27
AC9
B
399 402Right-handed 310
Helix 28
AD1
B
412 420Right-handed alpha
Helix 29
AD2
B
448 467Right-handed alpha
Helix 30
AD3
B
469 482Right-handed alpha
Helix 31
AD4
B
483 485Right-handed 310
Helix 32
AD5
C
151 179Right-handed alpha
Helix 33
AD6
C
189 209Right-handed alpha
Helix 34
AD7
C
220 224Right-handed 310
Helix 35
AD8
C
239 246Right-handed alpha
Helix 36
AD9
C
288 302Right-handed alpha
Helix 37
AE1
C
320 335Right-handed alpha
Helix 38
AE2
C
335 348Right-handed alpha
Helix 39
AE3
C
351 354Right-handed 310
Helix 40
AE4
C
378 382Right-handed 310
Helix 41
AE5
C
387 398Right-handed alpha
Helix 42
AE6
C
399 403Right-handed 310
Helix 43
AE7
C
412 420Right-handed alpha
Helix 44
AE8
C
448 467Right-handed alpha
Helix 45
AE9
C
469 482Right-handed alpha
Helix 46
AF1
C
483 485Right-handed 310
Helix 47
AF2
D
151 179Right-handed alpha
Helix 48
AF3
D
189 209Right-handed alpha
Helix 49
AF4
D
220 224Right-handed 310
Helix 50
AF5
D
239 246Right-handed alpha
Helix 51
AF6
D
288 302Right-handed alpha
Helix 52
AF7
D
320 335Right-handed alpha
Helix 53
AF8
D
335 349Right-handed alpha
Helix 54
AF9
D
351 354Right-handed 310
Helix 55
AG1
D
378 382Right-handed 310
Helix 56
AG2
D
387 398Right-handed alpha
Helix 57
AG3
D
399 402Right-handed 310
Helix 58
AG4
D
412 420Right-handed alpha
Helix 59
AG5
D
448 467Right-handed alpha
Helix 60
AG6
D
469 482Right-handed alpha
Helix 61
AG7
D
483 485Right-handed 310
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There are 8 sheets in PDB entry 5W40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 238first strand
Strand 2
A
214 218parallel
Strand 3
A
249 256parallel
Strand 4
A
261 268anti-parallel
Strand 5
A
273 279anti-parallel
Strand 6
A
306 311parallel
Strand 7
A
368 375parallel
Strand 8
A
356 361anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 427first strand
Strand 2
A
441 447anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 238first strand
Strand 2
B
214 218parallel
Strand 3
B
249 256parallel
Strand 4
B
261 268anti-parallel
Strand 5
B
273 279anti-parallel
Strand 6
B
306 311parallel
Strand 7
B
368 375parallel
Strand 8
B
356 361anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 427first strand
Strand 2
B
441 447anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
237 238first strand
Strand 2
C
214 218parallel
Strand 3
C
249 256parallel
Strand 4
C
261 268anti-parallel
Strand 5
C
273 279anti-parallel
Strand 6
C
306 311parallel
Strand 7
C
368 375parallel
Strand 8
C
356 361anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
421 427first strand
Strand 2
C
441 447anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
237 238first strand
Strand 2
D
214 218parallel
Strand 3
D
249 256parallel
Strand 4
D
261 268anti-parallel
Strand 5
D
273 279anti-parallel
Strand 6
D
306 311parallel
Strand 7
D
368 375parallel
Strand 8
D
356 361anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
421 426first strand
Strand 2
D
442 447anti-parallel
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