Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W4B entry

There are 4 chains in PDB entry 5W4B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 5	TYR 432
B	LYS 4	TYR 432
C	LEU 5	TYR 432
D	LYS 4	LYS 8

There are126 helices in PDB entry 5W4B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	13	Right-handed 310
Helix 2	AA2	A	14	28	Right-handed alpha
Helix 3	AA3	A	29	40	Right-handed alpha
Helix 4	AA4	A	57	70	Right-handed alpha
Helix 5	AA5	A	85	95	Right-handed alpha
Helix 6	AA6	A	106	117	Right-handed alpha
Helix 7	AA7	A	133	142	Right-handed alpha
Helix 8	AA8	A	146	150	Right-handed 310
Helix 9	AA9	A	157	171	Right-handed alpha
Helix 10	AB1	A	183	192	Right-handed alpha
Helix 11	AB2	A	192	208	Right-handed alpha
Helix 12	AB3	A	222	235	Right-handed alpha
Helix 13	AB4	A	245	255	Right-handed alpha
Helix 14	AB5	A	261	266	Right-handed alpha
Helix 15	AB6	A	283	288	Right-handed alpha
Helix 16	AB7	A	307	315	Right-handed alpha
Helix 17	AB8	A	341	343	Right-handed 310
Helix 18	AB9	A	344	349	Right-handed alpha
Helix 19	AC1	A	354	375	Right-handed alpha
Helix 20	AC2	A	387	400	Right-handed alpha
Helix 21	AC3	A	410	418	Right-handed alpha
Helix 22	AC4	B	11	13	Right-handed 310
Helix 23	AC5	B	14	28	Right-handed alpha
Helix 24	AC6	B	29	40	Right-handed alpha
Helix 25	AC7	B	57	70	Right-handed alpha
Helix 26	AC8	B	85	95	Right-handed alpha
Helix 27	AC9	B	106	116	Right-handed alpha
Helix 28	AD1	B	133	142	Right-handed alpha
Helix 29	AD2	B	157	170	Right-handed alpha
Helix 30	AD3	B	183	192	Right-handed alpha
Helix 31	AD4	B	192	208	Right-handed alpha
Helix 32	AD5	B	222	235	Right-handed alpha
Helix 33	AD6	B	245	255	Right-handed alpha
Helix 34	AD7	B	261	266	Right-handed alpha
Helix 35	AD8	B	283	288	Right-handed alpha
Helix 36	AD9	B	307	315	Right-handed alpha
Helix 37	AE1	B	341	343	Right-handed 310
Helix 38	AE2	B	344	349	Right-handed alpha
Helix 39	AE3	B	354	375	Right-handed alpha
Helix 40	AE4	B	387	400	Right-handed alpha
Helix 41	AE5	B	410	418	Right-handed alpha
Helix 42	AE6	C	11	13	Right-handed 310
Helix 43	AE7	C	14	28	Right-handed alpha
Helix 44	AE8	C	29	40	Right-handed alpha
Helix 45	AE9	C	57	70	Right-handed alpha
Helix 46	AF1	C	85	95	Right-handed alpha
Helix 47	AF2	C	106	116	Right-handed alpha
Helix 48	AF3	C	133	143	Right-handed alpha
Helix 49	AF4	C	144	147	Right-handed 310
Helix 50	AF5	C	157	170	Right-handed alpha
Helix 51	AF6	C	183	192	Right-handed alpha
Helix 52	AF7	C	192	208	Right-handed alpha
Helix 53	AF8	C	222	235	Right-handed alpha
Helix 54	AF9	C	245	255	Right-handed alpha
Helix 55	AG1	C	261	266	Right-handed alpha
Helix 56	AG2	C	283	288	Right-handed alpha
Helix 57	AG3	C	307	315	Right-handed alpha
Helix 58	AG4	C	341	343	Right-handed 310
Helix 59	AG5	C	344	349	Right-handed alpha
Helix 60	AG6	C	354	375	Right-handed alpha
Helix 61	AG7	C	387	400	Right-handed alpha
Helix 62	AG8	C	410	418	Right-handed alpha
Helix 63	AG9	D	11	13	Right-handed 310
Helix 64	AH1	D	14	28	Right-handed alpha
Helix 65	AH2	D	29	40	Right-handed alpha
Helix 66	AH3	D	57	70	Right-handed alpha
Helix 67	AH4	D	85	95	Right-handed alpha
Helix 68	AH5	D	106	116	Right-handed alpha
Helix 69	AH6	D	133	143	Right-handed alpha
Helix 70	AH7	D	144	150	Right-handed 310
Helix 71	AH8	D	157	170	Right-handed alpha
Helix 72	AH9	D	183	192	Right-handed alpha
Helix 73	AI1	D	192	208	Right-handed alpha
Helix 74	AI2	D	222	235	Right-handed alpha
Helix 75	AI3	D	245	255	Right-handed alpha
Helix 76	AI4	D	261	266	Right-handed alpha
Helix 77	AI5	D	283	288	Right-handed alpha
Helix 78	AI6	D	307	315	Right-handed alpha
Helix 79	AI7	D	341	343	Right-handed 310
Helix 80	AI8	D	344	349	Right-handed alpha
Helix 81	AI9	D	354	375	Right-handed alpha
Helix 82	AJ1	D	387	400	Right-handed alpha
Helix 83	AJ2	D	410	418	Right-handed alpha
Helix 84	AJ3	E	11	13	Right-handed 310
Helix 85	AJ4	E	14	27	Right-handed alpha
Helix 86	AJ5	E	29	40	Right-handed alpha
Helix 87	AJ6	E	57	70	Right-handed alpha
Helix 88	AJ7	E	85	95	Right-handed alpha
Helix 89	AJ8	E	106	116	Right-handed alpha
Helix 90	AJ9	E	133	143	Right-handed alpha
Helix 91	AK1	E	144	150	Right-handed 310
Helix 92	AK2	E	157	170	Right-handed alpha
Helix 93	AK3	E	183	192	Right-handed alpha
Helix 94	AK4	E	192	208	Right-handed alpha
Helix 95	AK5	E	222	235	Right-handed alpha
Helix 96	AK6	E	245	255	Right-handed alpha
Helix 97	AK7	E	261	266	Right-handed alpha
Helix 98	AK8	E	283	288	Right-handed alpha
Helix 99	AK9	E	307	315	Right-handed alpha
Helix 100	AL1	E	341	343	Right-handed 310
Helix 101	AL2	E	344	349	Right-handed alpha
Helix 102	AL3	E	354	375	Right-handed alpha
Helix 103	AL4	E	376	379	Right-handed 310
Helix 104	AL5	E	387	400	Right-handed alpha
Helix 105	AL6	E	410	418	Right-handed alpha
Helix 106	AL7	F	11	13	Right-handed 310
Helix 107	AL8	F	14	28	Right-handed alpha
Helix 108	AL9	F	29	40	Right-handed alpha
Helix 109	AM1	F	57	70	Right-handed alpha
Helix 110	AM2	F	85	95	Right-handed alpha
Helix 111	AM3	F	106	116	Right-handed alpha
Helix 112	AM4	F	133	143	Right-handed alpha
Helix 113	AM5	F	144	147	Right-handed 310
Helix 114	AM6	F	157	170	Right-handed alpha
Helix 115	AM7	F	183	191	Right-handed alpha
Helix 116	AM8	F	191	208	Right-handed alpha
Helix 117	AM9	F	222	235	Right-handed alpha
Helix 118	AN1	F	245	255	Right-handed alpha
Helix 119	AN2	F	261	266	Right-handed alpha
Helix 120	AN3	F	283	288	Right-handed alpha
Helix 121	AN4	F	307	315	Right-handed alpha
Helix 122	AN5	F	341	343	Right-handed 310
Helix 123	AN6	F	344	349	Right-handed alpha
Helix 124	AN7	F	354	375	Right-handed alpha
Helix 125	AN8	F	387	400	Right-handed alpha
Helix 126	AN9	F	410	418	Right-handed alpha

There are 13 sheets in PDB entry 5W4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	73	77	parallel
Strand 3	A	49	53	parallel
Strand 4	A	127	130	parallel
Strand 5	A	152	155	parallel
Strand 6	A	177	179	parallel
Strand 7	A	383	385	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	123	124	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	238	242	parallel
Strand 3	A	215	219	parallel
Strand 4	A	271	274	parallel
Strand 5	A	294	298	parallel
Strand 6	A	335	339	parallel
Strand 7	A	325	329	anti-parallel
Strand 8	A	317	322	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	73	77	parallel
Strand 3	B	49	53	parallel
Strand 4	B	127	130	parallel
Strand 5	B	152	155	parallel
Strand 6	B	176	179	parallel
Strand 7	B	382	385	parallel

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There are 16 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	238	242	parallel
Strand 3	B	215	219	parallel
Strand 4	B	271	274	parallel
Strand 5	B	294	298	parallel
Strand 6	B	335	339	parallel
Strand 7	B	325	329	anti-parallel
Strand 8	B	317	322	anti-parallel
Strand 9	D	317	322	anti-parallel
Strand 10	D	325	329	anti-parallel
Strand 11	D	335	339	anti-parallel
Strand 12	D	294	298	parallel
Strand 13	D	271	274	parallel
Strand 14	D	215	219	parallel
Strand 15	D	238	242	parallel
Strand 16	D	258	259	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	9	first strand
Strand 2	C	99	101	parallel
Strand 3	C	73	77	parallel
Strand 4	C	49	53	parallel
Strand 5	C	127	130	parallel
Strand 6	C	152	155	parallel
Strand 7	C	176	179	parallel
Strand 8	C	382	385	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	238	242	parallel
Strand 3	C	215	219	parallel
Strand 4	C	271	274	parallel
Strand 5	C	294	298	parallel
Strand 6	C	335	339	parallel
Strand 7	C	325	329	anti-parallel
Strand 8	C	317	322	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	100	first strand
Strand 2	D	73	77	parallel
Strand 3	D	49	53	parallel
Strand 4	D	127	130	parallel
Strand 5	D	152	155	parallel
Strand 6	D	176	179	parallel
Strand 7	D	382	385	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	99	100	first strand
Strand 2	E	73	77	parallel
Strand 3	E	49	53	parallel
Strand 4	E	127	130	parallel
Strand 5	E	152	155	parallel
Strand 6	E	177	179	parallel
Strand 7	E	383	385	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	E	123	124	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	238	242	parallel
Strand 3	E	215	219	parallel
Strand 4	E	271	274	parallel
Strand 5	E	294	298	parallel
Strand 6	E	335	339	parallel
Strand 7	E	325	329	anti-parallel
Strand 8	E	317	322	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	73	77	parallel
Strand 3	F	49	53	parallel
Strand 4	F	127	130	parallel
Strand 5	F	152	155	parallel
Strand 6	F	177	179	parallel
Strand 7	F	383	385	parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	259	first strand
Strand 2	F	238	242	parallel
Strand 3	F	215	219	parallel
Strand 4	F	271	274	parallel
Strand 5	F	294	298	parallel
Strand 6	F	335	339	parallel
Strand 7	F	325	329	anti-parallel
Strand 8	F	317	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W4B

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4B