Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W4C entry

There are 2 chains in PDB entry 5W4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 14ASP 369
B
 PHE 14GLU 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5W4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
63 67Right-handed 310
Helix 3
AA3
A
70 76Right-handed 310
Helix 4
AA4
A
91 105Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
158 163Right-handed alpha
Helix 7
AA7
A
170 175Right-handed alpha
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
191 202Right-handed alpha
Helix 10
AB1
A
222 229Right-handed alpha
Helix 11
AB2
A
282 286Right-handed 310
Helix 12
AB3
A
315 319Right-handed 310
Helix 13
AB4
A
324 349Right-handed alpha
Helix 14
AB5
A
354 358Right-handed 310
Helix 15
AB6
B
39 52Right-handed alpha
Helix 16
AB7
B
63 67Right-handed 310
Helix 17
AB8
B
71 76Right-handed 310
Helix 18
AB9
B
90 105Right-handed alpha
Helix 19
AC1
B
133 137Right-handed 310
Helix 20
AC2
B
158 163Right-handed alpha
Helix 21
AC3
B
170 175Right-handed alpha
Helix 22
AC4
B
177 181Right-handed 310
Helix 23
AC5
B
191 203Right-handed alpha
Helix 24
AC6
B
220 229Right-handed alpha
Helix 25
AC7
B
282 286Right-handed 310
Helix 26
AC8
B
315 319Right-handed 310
Helix 27
AC9
B
324 350Right-handed alpha
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There are 11 sheets in PDB entry 5W4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
57 59parallel
Strand 3
A
30 36parallel
Strand 4
A
138 145parallel
Strand 5
A
124 128anti-parallel
Strand 6
A
114 118anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
57 59parallel
Strand 3
A
30 36parallel
Strand 4
A
138 145parallel
Strand 5
A
311 313parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
89 90anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
278 280anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
271 274parallel
Strand 3
A
184 188parallel
Strand 4
A
207 211parallel
Strand 5
A
233 236parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 246first strand
Strand 2
A
251 258anti-parallel
Strand 3
A
264 267anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
57 59parallel
Strand 3
B
30 36parallel
Strand 4
B
138 145parallel
Strand 5
B
124 128anti-parallel
Strand 6
B
114 118anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
57 59parallel
Strand 3
B
30 36parallel
Strand 4
B
138 145parallel
Strand 5
B
311 313parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 151first strand
Strand 2
B
278 280anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
271 274parallel
Strand 3
B
184 188parallel
Strand 4
B
207 211parallel
Strand 5
B
233 236parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 246first strand
Strand 2
B
251 258anti-parallel
Strand 3
B
264 268anti-parallel
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