Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W4V entry

There are 6 chains in PDB entry 5W4V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 267	LEU 475
B	LEU 267	LEU 475
C	ILE 270	LEU 475
D	SER 266	PRO 468
E	LEU 267	LEU 472
F	LEU 267	PRO 468

There are 63 helices in PDB entry 5W4V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	267	283	Right-handed alpha
Helix 2	AA2	A	288	295	Right-handed alpha
Helix 3	AA3	A	301	311	Right-handed alpha
Helix 4	AA4	A	312	337	Right-handed alpha
Helix 5	AA5	A	345	366	Right-handed alpha
Helix 6	AA6	A	384	392	Right-handed 310
Helix 7	AA7	A	393	409	Right-handed alpha
Helix 8	AA8	A	413	426	Right-handed alpha
Helix 9	AA9	A	435	457	Right-handed alpha
Helix 10	AB1	A	458	466	Right-handed 310
Helix 11	AB2	B	268	283	Right-handed alpha
Helix 12	AB3	B	288	295	Right-handed alpha
Helix 13	AB4	B	301	311	Right-handed alpha
Helix 14	AB5	B	312	337	Right-handed alpha
Helix 15	AB6	B	345	366	Right-handed alpha
Helix 16	AB7	B	384	392	Right-handed 310
Helix 17	AB8	B	393	409	Right-handed alpha
Helix 18	AB9	B	413	426	Right-handed alpha
Helix 19	AC1	B	435	457	Right-handed alpha
Helix 20	AC2	B	458	466	Right-handed 310
Helix 21	AC3	C	271	285	Right-handed alpha
Helix 22	AC4	C	288	295	Right-handed alpha
Helix 23	AC5	C	301	311	Right-handed alpha
Helix 24	AC6	C	312	337	Right-handed alpha
Helix 25	AC7	C	339	344	Right-handed alpha
Helix 26	AC8	C	345	366	Right-handed alpha
Helix 27	AC9	C	384	392	Right-handed 310
Helix 28	AD1	C	393	409	Right-handed alpha
Helix 29	AD2	C	413	426	Right-handed alpha
Helix 30	AD3	C	435	456	Right-handed alpha
Helix 31	AD4	C	457	458	Right-handed 310
Helix 32	AD5	C	459	466	Right-handed 310
Helix 33	AD6	D	267	283	Right-handed alpha
Helix 34	AD7	D	288	295	Right-handed alpha
Helix 35	AD8	D	301	311	Right-handed alpha
Helix 36	AD9	D	314	337	Right-handed alpha
Helix 37	AE1	D	345	366	Right-handed alpha
Helix 38	AE2	D	384	392	Right-handed 310
Helix 39	AE3	D	393	409	Right-handed alpha
Helix 40	AE4	D	413	426	Right-handed alpha
Helix 41	AE5	D	435	456	Right-handed alpha
Helix 42	AE6	D	457	458	Right-handed 310
Helix 43	AE7	D	459	466	Right-handed 310
Helix 44	AE8	E	268	283	Right-handed alpha
Helix 45	AE9	E	288	295	Right-handed alpha
Helix 46	AF1	E	303	311	Right-handed alpha
Helix 47	AF2	E	312	337	Right-handed alpha
Helix 48	AF3	E	345	366	Right-handed alpha
Helix 49	AF4	E	384	392	Right-handed 310
Helix 50	AF5	E	393	409	Right-handed alpha
Helix 51	AF6	E	413	426	Right-handed alpha
Helix 52	AF7	E	435	457	Right-handed alpha
Helix 53	AF8	E	458	466	Right-handed 310
Helix 54	AF9	F	268	283	Right-handed alpha
Helix 55	AG1	F	288	295	Right-handed alpha
Helix 56	AG2	F	301	311	Right-handed alpha
Helix 57	AG3	F	312	337	Right-handed alpha
Helix 58	AG4	F	345	366	Right-handed alpha
Helix 59	AG5	F	384	392	Right-handed 310
Helix 60	AG6	F	393	409	Right-handed alpha
Helix 61	AG7	F	413	426	Right-handed alpha
Helix 62	AG8	F	435	457	Right-handed alpha
Helix 63	AG9	F	458	466	Right-handed 310

There are 6 sheets in PDB entry 5W4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	370	first strand
Strand 2	A	375	378	anti-parallel
Strand 3	A	381	383	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	375	378	anti-parallel
Strand 3	B	381	383	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	370	first strand
Strand 2	C	375	378	anti-parallel
Strand 3	C	381	383	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	375	378	anti-parallel
Strand 3	D	381	383	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	369	370	first strand
Strand 2	E	375	378	anti-parallel
Strand 3	E	381	383	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	369	370	first strand
Strand 2	F	375	378	anti-parallel
Strand 3	F	381	383	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W4V

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4V