Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W4X entry

There are 3 chains in PDB entry 5W4X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 2VAL 466
B
 MET 1VAL 466
C
 MET 1GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 5W4X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
38 46Right-handed alpha
Helix 3
AA3
A
56 65Right-handed alpha
Helix 4
AA4
A
74 82Right-handed alpha
Helix 5
AA5
A
106 119Right-handed alpha
Helix 6
AA6
A
135 147Right-handed alpha
Helix 7
AA7
A
167 174Right-handed alpha
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
204 206Right-handed 310
Helix 10
AB1
A
212 245Right-handed alpha
Helix 11
AB2
A
247 257Right-handed alpha
Helix 12
AB3
A
276 291Right-handed alpha
Helix 13
AB4
A
293 322Right-handed alpha
Helix 14
AB5
A
348 359Right-handed alpha
Helix 15
AB6
A
372 380Right-handed alpha
Helix 16
AB7
A
390 394Right-handed alpha
Helix 17
AB8
A
400 405Right-handed alpha
Helix 18
AB9
A
417 423Right-handed 310
Helix 19
AC1
A
424 431Right-handed alpha
Helix 20
AC2
A
448 456Right-handed alpha
Helix 21
AC3
B
15 27Right-handed alpha
Helix 22
AC4
B
38 46Right-handed alpha
Helix 23
AC5
B
56 65Right-handed alpha
Helix 24
AC6
B
74 82Right-handed alpha
Helix 25
AC7
B
106 119Right-handed alpha
Helix 26
AC8
B
135 147Right-handed alpha
Helix 27
AC9
B
167 174Right-handed alpha
Helix 28
AD1
B
185 200Right-handed alpha
Helix 29
AD2
B
204 206Right-handed 310
Helix 30
AD3
B
213 245Right-handed alpha
Helix 31
AD4
B
247 257Right-handed alpha
Helix 32
AD5
B
276 291Right-handed alpha
Helix 33
AD6
B
293 322Right-handed alpha
Helix 34
AD7
B
348 359Right-handed alpha
Helix 35
AD8
B
372 381Right-handed alpha
Helix 36
AD9
B
390 394Right-handed alpha
Helix 37
AE1
B
400 405Right-handed alpha
Helix 38
AE2
B
417 423Right-handed 310
Helix 39
AE3
B
424 431Right-handed alpha
Helix 40
AE4
B
448 456Right-handed alpha
Helix 41
AE5
C
15 27Right-handed alpha
Helix 42
AE6
C
38 46Right-handed alpha
Helix 43
AE7
C
56 65Right-handed alpha
Helix 44
AE8
C
74 82Right-handed alpha
Helix 45
AE9
C
106 119Right-handed alpha
Helix 46
AF1
C
135 147Right-handed alpha
Helix 47
AF2
C
167 174Right-handed alpha
Helix 48
AF3
C
185 200Right-handed alpha
Helix 49
AF4
C
204 206Right-handed 310
Helix 50
AF5
C
213 245Right-handed alpha
Helix 51
AF6
C
247 257Right-handed alpha
Helix 52
AF7
C
276 291Right-handed alpha
Helix 53
AF8
C
293 322Right-handed alpha
Helix 54
AF9
C
348 359Right-handed alpha
Helix 55
AG1
C
372 380Right-handed alpha
Helix 56
AG2
C
389 394Right-handed alpha
Helix 57
AG3
C
400 405Right-handed alpha
Helix 58
AG4
C
417 423Right-handed 310
Helix 59
AG5
C
424 431Right-handed alpha
Helix 60
AG6
C
448 456Right-handed alpha
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There are 8 sheets in PDB entry 5W4X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
31 35parallel
Strand 3
A
6 10parallel
Strand 4
A
84 87parallel
Strand 5
A
123 128parallel
Strand 6
A
153 158parallel
Strand 7
A
178 182anti-parallel
Strand 8
A
208 211parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
363 367parallel
Strand 3
A
330 334parallel
Strand 4
A
410 413parallel
Strand 5
A
437 440parallel
Strand 6
A
458 461parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
31 35parallel
Strand 3
B
6 10parallel
Strand 4
B
84 87parallel
Strand 5
B
122 128parallel
Strand 6
B
152 158parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
208 212parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
363 367parallel
Strand 3
B
330 334parallel
Strand 4
B
410 413parallel
Strand 5
B
437 440parallel
Strand 6
B
458 461parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
31 35parallel
Strand 3
C
6 10parallel
Strand 4
C
84 87parallel
Strand 5
C
123 128parallel
Strand 6
C
153 158parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 182first strand
Strand 2
C
208 212parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
395 397first strand
Strand 2
C
363 367parallel
Strand 3
C
330 334parallel
Strand 4
C
410 413parallel
Strand 5
C
437 440parallel
Strand 6
C
458 461parallel
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