Analysis of interatomic Contacts of Structural Units in PDB entry:
5W4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W4Y entry

There are 2 chains in PDB entry 5W4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ALA 456
B
 MET 6GLY 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 5W4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
39 54Right-handed alpha
Helix 3
AA3
A
75 80Right-handed alpha
Helix 4
AA4
A
88 98Right-handed alpha
Helix 5
AA5
A
115 131Right-handed alpha
Helix 6
AA6
A
143 152Right-handed alpha
Helix 7
AA7
A
157 178Right-handed alpha
Helix 8
AA8
A
195 199Right-handed 310
Helix 9
AA9
A
233 244Right-handed alpha
Helix 10
AB1
A
253 271Right-handed alpha
Helix 11
AB2
A
274 278Right-handed 310
Helix 12
AB3
A
291 305Right-handed alpha
Helix 13
AB4
A
309 320Right-handed alpha
Helix 14
AB5
A
331 339Right-handed 310
Helix 15
AB6
A
340 347Right-handed alpha
Helix 16
AB7
A
351 363Right-handed alpha
Helix 17
AB8
A
372 388Right-handed alpha
Helix 18
AB9
A
400 410Right-handed alpha
Helix 19
AC1
A
410 417Right-handed alpha
Helix 20
AC2
A
428 435Right-handed alpha
Helix 21
AC3
A
445 451Right-handed 310
Helix 22
AC4
B
33 37Right-handed 310
Helix 23
AC5
B
39 54Right-handed alpha
Helix 24
AC6
B
74 80Right-handed alpha
Helix 25
AC7
B
88 98Right-handed alpha
Helix 26
AC8
B
115 131Right-handed alpha
Helix 27
AC9
B
143 152Right-handed alpha
Helix 28
AD1
B
157 178Right-handed alpha
Helix 29
AD2
B
195 199Right-handed 310
Helix 30
AD3
B
233 244Right-handed alpha
Helix 31
AD4
B
253 271Right-handed alpha
Helix 32
AD5
B
274 278Right-handed 310
Helix 33
AD6
B
291 306Right-handed alpha
Helix 34
AD7
B
307 320Right-handed alpha
Helix 35
AD8
B
331 335Right-handed 310
Helix 36
AD9
B
340 348Right-handed 310
Helix 37
AE1
B
351 363Right-handed alpha
Helix 38
AE2
B
372 388Right-handed alpha
Helix 39
AE3
B
400 410Right-handed alpha
Helix 40
AE4
B
410 417Right-handed alpha
Helix 41
AE5
B
428 435Right-handed alpha
Helix 42
AE6
B
445 451Right-handed 310
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There are 6 sheets in PDB entry 5W4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 16first strand
Strand 2
A
57 61parallel
Strand 3
A
104 110parallel
Strand 4
A
134 139parallel
Strand 5
A
226 229parallel
Strand 6
A
246 249parallel
Strand 7
A
279 284parallel
Strand 8
A
391 394parallel
Strand 9
A
10 16parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 205first strand
Strand 2
A
210 213anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 288first strand
Strand 2
A
369 371parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 16first strand
Strand 2
B
57 61parallel
Strand 3
B
104 110parallel
Strand 4
B
134 139parallel
Strand 5
B
226 229parallel
Strand 6
B
246 249parallel
Strand 7
B
279 284parallel
Strand 8
B
391 394parallel
Strand 9
B
10 16parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 205first strand
Strand 2
B
210 213anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 288first strand
Strand 2
B
369 371parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il