Analysis of interatomic Contacts of Structural Units in PDB entry:
5W56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W56 entry

There are 2 chains in PDB entry 5W56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25ARG 309
B
 PRO 26ARG 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5W56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
68 75Right-handed alpha
Helix 3
AA3
A
86 98Right-handed alpha
Helix 4
AA4
A
138 141Right-handed 310
Helix 5
AA5
A
142 161Right-handed alpha
Helix 6
AA6
A
164 192Right-handed alpha
Helix 7
AA7
A
207 214Right-handed alpha
Helix 8
AA8
A
234 246Right-handed alpha
Helix 9
AA9
A
258 269Right-handed alpha
Helix 10
AB1
A
290 309Right-handed alpha
Helix 11
AB2
B
34 45Right-handed alpha
Helix 12
AB3
B
68 76Right-handed alpha
Helix 13
AB4
B
86 98Right-handed alpha
Helix 14
AB5
B
138 141Right-handed 310
Helix 15
AB6
B
142 161Right-handed alpha
Helix 16
AB7
B
161 192Right-handed alpha
Helix 17
AB8
B
207 215Right-handed alpha
Helix 18
AB9
B
231 245Right-handed alpha
Helix 19
AC1
B
257 269Right-handed alpha
Helix 20
AC2
B
290 309Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5W56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
27 33parallel
Strand 3
A
78 81parallel
Strand 4
A
102 105parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
199 202parallel
Strand 3
A
249 252parallel
Strand 4
A
272 275parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
27 33parallel
Strand 3
B
78 81parallel
Strand 4
B
102 105parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
199 201parallel
Strand 3
B
249 252parallel
Strand 4
B
272 275parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il