Analysis of interatomic Contacts of Structural Units in PDB entry:
5W57


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W57 entry

There are 2 chains in PDB entry 5W57 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25ALA 308
B
 GLU 25ALA 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5W57. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
66 75Right-handed alpha
Helix 3
AA3
A
89 98Right-handed alpha
Helix 4
AA4
A
138 141Right-handed 310
Helix 5
AA5
A
142 161Right-handed alpha
Helix 6
AA6
A
164 192Right-handed alpha
Helix 7
AA7
A
207 215Right-handed alpha
Helix 8
AA8
A
231 233Right-handed 310
Helix 9
AA9
A
234 245Right-handed alpha
Helix 10
AB1
A
258 269Right-handed alpha
Helix 11
AB2
A
290 308Right-handed alpha
Helix 12
AB3
B
34 45Right-handed alpha
Helix 13
AB4
B
59 63Right-handed 310
Helix 14
AB5
B
66 76Right-handed alpha
Helix 15
AB6
B
89 98Right-handed alpha
Helix 16
AB7
B
138 141Right-handed 310
Helix 17
AB8
B
142 161Right-handed alpha
Helix 18
AB9
B
164 192Right-handed alpha
Helix 19
AC1
B
207 215Right-handed alpha
Helix 20
AC2
B
231 245Right-handed alpha
Helix 21
AC3
B
258 269Right-handed alpha
Helix 22
AC4
B
290 308Right-handed alpha
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There are 5 sheets in PDB entry 5W57. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 54first strand
Strand 2
A
27 33parallel
Strand 3
A
78 81parallel
Strand 4
A
102 105parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
217 219parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
272 276parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 54first strand
Strand 2
B
27 33parallel
Strand 3
B
78 81parallel
Strand 4
B
102 105parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 219first strand
Strand 2
B
199 201parallel
Strand 3
B
249 253parallel
Strand 4
B
272 276parallel
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