Analysis of interatomic Contacts of Structural Units in PDB entry:
5W59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W59 entry

There are 2 chains in PDB entry 5W59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 58ASP 203
B
 ASN 147GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5W59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 93Right-handed 310
Helix 2
AA2
A
131 134Right-handed 310
Helix 3
AA3
A
174 178Right-handed 310
Helix 4
AA4
A
182 185Right-handed 310
Helix 5
AA5
A
193 197Right-handed 310
Helix 6
AA6
B
158 162Right-handed 310
Helix 7
AA7
B
198 202Right-handed 310
Helix 8
AA8
B
221 225Right-handed 310
Helix 9
AA9
B
319 324Right-handed alpha
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There are 9 sheets in PDB entry 5W59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
104 109anti-parallel
Strand 6
A
136 140anti-parallel
Strand 7
A
146 154anti-parallel
Strand 8
A
161 163anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
187 191anti-parallel
Strand 5
A
146 154anti-parallel
Strand 6
A
161 163anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
124 127anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 155first strand
Strand 2
B
180 183anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 169first strand
Strand 2
B
237 248parallel
Strand 3
B
226 234anti-parallel
Strand 4
B
187 192anti-parallel
Strand 5
B
195 196anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
214 217anti-parallel
Strand 3
B
207 209anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 257first strand
Strand 2
B
279 280anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 268first strand
Strand 2
B
348 359parallel
Strand 3
B
337 345anti-parallel
Strand 4
B
286 293anti-parallel
Strand 5
B
307 313anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 276first strand
Strand 2
B
325 328anti-parallel
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