Analysis of interatomic Contacts of Structural Units in PDB entry:
5W5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W5A entry

There are 2 chains in PDB entry 5W5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 20GLN 244
B
 GLY 19GLN 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5W5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 35Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
109 116Right-handed alpha
Helix 5
AA5
A
136 146Right-handed alpha
Helix 6
AA6
A
146 170Right-handed alpha
Helix 7
AA7
A
175 188Right-handed alpha
Helix 8
AA8
A
196 204Right-handed alpha
Helix 9
AA9
A
207 221Right-handed alpha
Helix 10
AB1
A
235 244Right-handed alpha
Helix 11
AB2
B
23 34Right-handed alpha
Helix 12
AB3
B
35 37Right-handed 310
Helix 13
AB4
B
39 43Right-handed 310
Helix 14
AB5
B
46 53Right-handed alpha
Helix 15
AB6
B
109 115Right-handed alpha
Helix 16
AB7
B
136 146Right-handed alpha
Helix 17
AB8
B
146 172Right-handed alpha
Helix 18
AB9
B
175 188Right-handed alpha
Helix 19
AC1
B
196 205Right-handed alpha
Helix 20
AC2
B
207 221Right-handed alpha
Helix 21
AC3
B
235 243Right-handed alpha
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There are 6 sheets in PDB entry 5W5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
107 108anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 69first strand
Strand 2
A
122 125anti-parallel
Strand 3
A
86 90anti-parallel
Strand 4
A
97 102anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 193first strand
Strand 2
A
230 233anti-parallel
Strand 3
A
224 227anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 62first strand
Strand 2
B
129 135anti-parallel
Strand 3
B
77 83anti-parallel
Strand 4
B
107 108anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
122 125anti-parallel
Strand 3
B
86 90anti-parallel
Strand 4
B
97 102anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
231 233anti-parallel
Strand 3
B
224 226anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il