Analysis of interatomic Contacts of Structural Units in PDB entry:
5W5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W5C entry

There are 6 chains in PDB entry 5W5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 29ARG 66
B
 ALA 191VAL 244
C
 GLU 10ALA 74
D
 ALA 141ALA 195
E
 LYS 51LYS 75
F
 GLY 143ALA 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5W5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 65Right-handed alpha
Helix 2
AA2
B
192 243Right-handed alpha
Helix 3
AA3
C
10 12Right-handed 310
Helix 4
AA4
C
13 72Right-handed alpha
Helix 5
AA5
D
142 195Right-handed alpha
Helix 6
AA6
E
52 71Right-handed alpha
Helix 7
AA7
F
215 219Right-handed 310
Helix 8
AA8
F
348 353Right-handed alpha
Helix 9
AA9
F
365 367Right-handed 310
Helix 10
AB1
F
383 396Right-handed alpha
Helix 11
AB2
F
409 418Right-handed alpha
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There are 5 sheets in PDB entry 5W5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 212first strand
Strand 2
F
157 166anti-parallel
Strand 3
F
144 152anti-parallel
Strand 4
F
256 260anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
179 180first strand
Strand 2
F
223 230anti-parallel
Strand 3
F
183 184anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
179 180first strand
Strand 2
F
223 230anti-parallel
Strand 3
F
241 246anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
338 346first strand
Strand 2
F
288 297anti-parallel
Strand 3
F
275 283anti-parallel
Strand 4
F
401 406anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
321 327first strand
Strand 2
F
310 318anti-parallel
Strand 3
F
355 363anti-parallel
Strand 4
F
372 379anti-parallel
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