Analysis of interatomic Contacts of Structural Units in PDB entry:
5W5J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W5J entry

There are 2 chains in PDB entry 5W5J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9LYS 310
B
 LEU 10LYS 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5W5J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
102 109Right-handed alpha
Helix 3
AA3
A
117 138Right-handed alpha
Helix 4
AA4
A
189 193Right-handed 310
Helix 5
AA5
A
194 198Right-handed 310
Helix 6
AA6
A
209 225Right-handed alpha
Helix 7
AA7
A
234 244Right-handed alpha
Helix 8
AA8
A
261 273Right-handed alpha
Helix 9
AA9
A
276 280Right-handed 310
Helix 10
AB1
A
282 296Right-handed alpha
Helix 11
AB2
A
298 309Right-handed alpha
Helix 12
AB3
B
14 16Right-handed 310
Helix 13
AB4
B
63 73Right-handed alpha
Helix 14
AB5
B
102 109Right-handed alpha
Helix 15
AB6
B
117 138Right-handed alpha
Helix 16
AB7
B
189 193Right-handed 310
Helix 17
AB8
B
194 198Right-handed 310
Helix 18
AB9
B
209 225Right-handed alpha
Helix 19
AC1
B
234 244Right-handed alpha
Helix 20
AC2
B
261 273Right-handed alpha
Helix 21
AC3
B
276 280Right-handed 310
Helix 22
AC4
B
282 296Right-handed alpha
Helix 23
AC5
B
298 308Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5W5J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 25first strand
Strand 2
A
32 37anti-parallel
Strand 3
A
42 47anti-parallel
Strand 4
A
93 96anti-parallel
Strand 5
A
81 84anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
160 162anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 25first strand
Strand 2
B
32 37anti-parallel
Strand 3
B
43 48anti-parallel
Strand 4
B
91 96anti-parallel
Strand 5
B
81 86anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
160 162anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il