Analysis of interatomic Contacts of Structural Units in PDB entry:
5W5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W5P entry

There is 1 chain in PDB entry 5W5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 10THR 619
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5W5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
25 32Right-handed alpha
Helix 3
AA3
A
37 43Right-handed alpha
Helix 4
AA4
A
103 108Right-handed 310
Helix 5
AA5
A
117 129Right-handed alpha
Helix 6
AA6
A
182 184Right-handed 310
Helix 7
AA7
A
341 346Right-handed alpha
Helix 8
AA8
A
373 377Right-handed 310
Helix 9
AA9
A
433 437Right-handed 310
Helix 10
AB1
A
441 445Right-handed 310
Helix 11
AB2
A
458 461Right-handed alpha
Helix 12
AB3
A
474 480Right-handed alpha
Helix 13
AB4
A
482 486Right-handed 310
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There are 9 sheets in PDB entry 5W5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
93 96anti-parallel
Strand 4
A
85 87anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 136first strand
Strand 2
A
160 165parallel
Strand 3
A
195 200parallel
Strand 4
A
222 228parallel
Strand 5
A
253 259parallel
Strand 6
A
275 281parallel
Strand 7
A
302 306parallel
Strand 8
A
324 330parallel
Strand 9
A
361 366parallel
Strand 10
A
403 405parallel
Strand 11
A
423 424parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
168 171parallel
Strand 3
A
205 207parallel
Strand 4
A
231 233parallel
Strand 5
A
262 264parallel
Strand 6
A
284 286parallel
Strand 7
A
311 313parallel
Strand 8
A
333 335parallel
Strand 9
A
369 371parallel
Strand 10
A
408 409parallel
Strand 11
A
427 428parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
178 180parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
237 240parallel
Strand 3
A
268 272parallel
Strand 4
A
290 294parallel
Strand 5
A
317 321parallel
Strand 6
A
349 350parallel
Strand 7
A
385 386parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 457first strand
Strand 2
A
594 604anti-parallel
Strand 3
A
488 499anti-parallel
Strand 4
A
505 519anti-parallel
Strand 5
A
531 542anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
466 473anti-parallel
Strand 3
A
573 578anti-parallel
Strand 4
A
565 570anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
466 473anti-parallel
Strand 3
A
617 618anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 549first strand
Strand 2
A
554 555anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il