Analysis of interatomic Contacts of Structural Units in PDB entry:
5W6C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W6C entry

There are 2 chains in PDB entry 5W6C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1PRO 225
L
 GLN 1PRO 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5W6C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
65 67Right-handed 310
Helix 2
AA2
H
75 77Right-handed 310
Helix 3
AA3
H
88 92Right-handed 310
Helix 4
AA4
H
104 108Right-handed 310
Helix 5
AA5
H
168 170Right-handed 310
Helix 6
AA6
H
199 201Right-handed 310
Helix 7
AA7
H
213 216Right-handed 310
Helix 8
AA8
L
28 32Right-handed 310
Helix 9
AA9
L
81 85Right-handed 310
Helix 10
AB1
L
127 133Right-handed alpha
Helix 11
AB2
L
187 194Right-handed alpha
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There are 11 sheets in PDB entry 5W6C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
119 123parallel
Strand 3
H
93 101anti-parallel
Strand 4
H
34 41anti-parallel
Strand 5
H
48 54anti-parallel
Strand 6
H
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 139first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
175 177anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
132 139first strand
Strand 2
H
147 157anti-parallel
Strand 3
H
188 197anti-parallel
Strand 4
H
181 182anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
163 166first strand
Strand 2
H
207 212anti-parallel
Strand 3
H
217 222anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
107 111parallel
Strand 3
L
86 94anti-parallel
Strand 4
L
36 40anti-parallel
Strand 5
L
47 50anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
107 111parallel
Strand 3
L
86 94anti-parallel
Strand 4
L
100 103anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 69anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
120 124first strand
Strand 2
L
136 145anti-parallel
Strand 3
L
178 186anti-parallel
Strand 4
L
165 167anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
120 124first strand
Strand 2
L
136 145anti-parallel
Strand 3
L
178 186anti-parallel
Strand 4
L
171 172anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
159 161first strand
Strand 2
L
151 156anti-parallel
Strand 3
L
197 203anti-parallel
Strand 4
L
206 212anti-parallel
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