Analysis of interatomic Contacts of Structural Units in PDB entry:
5W6H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W6H entry

There are 2 chains in PDB entry 5W6H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 340	ILE 1036
B	GLY 340	GLN 979

There are 32 helices in PDB entry 5W6H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	341	353	Right-handed alpha
Helix 2	AA2	A	355	357	Right-handed 310
Helix 3	AA3	A	412	419	Right-handed alpha
Helix 4	AA4	A	465	469	Right-handed 310
Helix 5	AA5	A	480	489	Right-handed alpha
Helix 6	AA6	A	492	497	Right-handed 310
Helix 7	AA7	A	502	507	Right-handed alpha
Helix 8	AA8	A	566	570	Right-handed alpha
Helix 9	AA9	A	576	588	Right-handed alpha
Helix 10	AB1	A	640	642	Right-handed 310
Helix 11	AB2	A	643	650	Right-handed alpha
Helix 12	AB3	A	876	880	Right-handed 310
Helix 13	AB4	B	341	353	Right-handed alpha
Helix 14	AB5	B	355	357	Right-handed 310
Helix 15	AB6	B	412	419	Right-handed alpha
Helix 16	AB7	B	480	489	Right-handed alpha
Helix 17	AB8	B	492	497	Right-handed 310
Helix 18	AB9	B	502	507	Right-handed alpha
Helix 19	AC1	B	576	588	Right-handed alpha
Helix 20	AC2	B	640	650	Right-handed alpha
Helix 21	AC3	B	876	880	Right-handed 310
Helix 22	AC4	C	341	353	Right-handed alpha
Helix 23	AC5	C	355	357	Right-handed 310
Helix 24	AC6	C	412	419	Right-handed alpha
Helix 25	AC7	C	465	469	Right-handed 310
Helix 26	AC8	C	480	490	Right-handed alpha
Helix 27	AC9	C	492	497	Right-handed 310
Helix 28	AD1	C	502	507	Right-handed alpha
Helix 29	AD2	C	567	570	Right-handed 310
Helix 30	AD3	C	576	588	Right-handed alpha
Helix 31	AD4	C	640	650	Right-handed alpha
Helix 32	AD5	C	876	880	Right-handed 310

There are 39 sheets in PDB entry 5W6H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	359	361	first strand
Strand 2	A	373	376	parallel
Strand 3	A	381	384	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	402	405	anti-parallel
Strand 3	A	408	411	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	428	first strand
Strand 2	A	440	444	parallel
Strand 3	A	447	451	anti-parallel
Strand 4	A	476	479	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	433	435	first strand
Strand 2	A	457	459	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	519	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	554	557	anti-parallel
Strand 4	A	547	549	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	565	first strand
Strand 2	A	591	593	parallel
Strand 3	A	612	614	parallel
Strand 4	A	652	654	parallel
Strand 5	A	680	682	parallel
Strand 6	A	702	704	parallel
Strand 7	A	728	731	parallel
Strand 8	A	748	752	parallel
Strand 9	A	776	780	parallel
Strand 10	A	802	806	parallel
Strand 11	A	828	832	parallel
Strand 12	A	861	864	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	599	first strand
Strand 2	A	619	622	parallel
Strand 3	A	657	659	parallel
Strand 4	A	685	687	parallel
Strand 5	A	707	709	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	606	first strand
Strand 2	A	630	635	parallel
Strand 3	A	665	668	parallel
Strand 4	A	692	694	parallel
Strand 5	A	716	719	parallel
Strand 6	A	742	745	parallel
Strand 7	A	769	772	parallel
Strand 8	A	795	797	parallel
Strand 9	A	821	823	parallel
Strand 10	A	854	855	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	677	first strand
Strand 2	A	698	699	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	755	758	first strand
Strand 2	A	783	786	parallel
Strand 3	A	809	811	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	835	836	first strand
Strand 2	A	867	868	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	904	907	first strand
Strand 2	A	941	948	anti-parallel
Strand 3	A	1012	1020	anti-parallel
Strand 4	A	968	976	anti-parallel
Strand 5	A	987	990	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	918	first strand
Strand 2	A	930	935	anti-parallel
Strand 3	A	1024	1035	anti-parallel
Strand 4	A	956	965	anti-parallel
Strand 5	A	998	1005	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	373	376	parallel
Strand 3	B	381	384	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	402	405	anti-parallel
Strand 3	B	408	411	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	428	first strand
Strand 2	B	440	443	parallel
Strand 3	B	448	451	anti-parallel
Strand 4	B	476	479	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	457	459	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	521	first strand
Strand 2	B	529	536	anti-parallel
Strand 3	B	554	557	anti-parallel
Strand 4	B	547	549	anti-parallel

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There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	B	591	593	parallel
Strand 3	B	612	614	parallel
Strand 4	B	652	654	parallel
Strand 5	B	680	682	parallel
Strand 6	B	702	704	parallel
Strand 7	B	728	731	parallel
Strand 8	B	748	752	parallel
Strand 9	B	776	780	parallel
Strand 10	B	802	806	parallel
Strand 11	B	828	832	parallel
Strand 12	B	861	864	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	599	first strand
Strand 2	B	619	622	parallel
Strand 3	B	657	659	parallel
Strand 4	B	685	687	parallel
Strand 5	B	707	709	parallel

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There are 10 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	603	606	first strand
Strand 2	B	630	635	parallel
Strand 3	B	665	668	parallel
Strand 4	B	692	694	parallel
Strand 5	B	716	719	parallel
Strand 6	B	742	745	parallel
Strand 7	B	769	772	parallel
Strand 8	B	795	797	parallel
Strand 9	B	821	823	parallel
Strand 10	B	854	855	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	676	677	first strand
Strand 2	B	698	699	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	755	758	first strand
Strand 2	B	783	786	parallel
Strand 3	B	809	811	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	835	836	first strand
Strand 2	B	867	868	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	904	907	first strand
Strand 2	B	941	948	anti-parallel
Strand 3	B	1012	1020	anti-parallel
Strand 4	B	968	976	anti-parallel
Strand 5	B	987	990	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	914	918	first strand
Strand 2	B	930	935	anti-parallel
Strand 3	B	1024	1035	anti-parallel
Strand 4	B	956	965	anti-parallel
Strand 5	B	998	1005	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	359	361	first strand
Strand 2	C	373	376	parallel
Strand 3	C	381	384	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	397	first strand
Strand 2	C	402	405	anti-parallel
Strand 3	C	408	411	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	423	428	first strand
Strand 2	C	440	443	parallel
Strand 3	C	448	451	anti-parallel
Strand 4	C	476	479	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	435	first strand
Strand 2	C	457	459	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	516	519	first strand
Strand 2	C	531	536	anti-parallel
Strand 3	C	554	557	anti-parallel
Strand 4	C	547	549	anti-parallel

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There are 12 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	565	first strand
Strand 2	C	591	593	parallel
Strand 3	C	612	614	parallel
Strand 4	C	652	654	parallel
Strand 5	C	680	682	parallel
Strand 6	C	702	704	parallel
Strand 7	C	728	731	parallel
Strand 8	C	748	752	parallel
Strand 9	C	776	780	parallel
Strand 10	C	802	806	parallel
Strand 11	C	828	832	parallel
Strand 12	C	861	864	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	597	599	first strand
Strand 2	C	619	622	parallel
Strand 3	C	657	659	parallel
Strand 4	C	685	687	parallel
Strand 5	C	707	709	parallel

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There are 10 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	606	first strand
Strand 2	C	630	635	parallel
Strand 3	C	665	668	parallel
Strand 4	C	692	694	parallel
Strand 5	C	716	719	parallel
Strand 6	C	742	745	parallel
Strand 7	C	769	772	parallel
Strand 8	C	795	797	parallel
Strand 9	C	821	823	parallel
Strand 10	C	854	855	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	698	699	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	755	758	first strand
Strand 2	C	783	786	parallel
Strand 3	C	809	811	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	835	836	first strand
Strand 2	C	867	868	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	904	907	first strand
Strand 2	C	942	948	anti-parallel
Strand 3	C	1012	1020	anti-parallel
Strand 4	C	968	976	anti-parallel
Strand 5	C	987	990	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	914	918	first strand
Strand 2	C	930	935	anti-parallel
Strand 3	C	1024	1035	anti-parallel
Strand 4	C	956	965	anti-parallel
Strand 5	C	998	1005	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W6H

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W6H