Analysis of interatomic Contacts of Structural Units in PDB entry:
5W6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W6M entry

There are 2 chains in PDB entry 5W6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 54GLY 503
B
 PHE 54THR 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5W6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 87Right-handed alpha
Helix 2
AA2
A
99 104Right-handed 310
Helix 3
AA3
A
131 143Right-handed alpha
Helix 4
AA4
A
185 202Right-handed alpha
Helix 5
AA5
A
214 225Right-handed alpha
Helix 6
AA6
A
230 239Right-handed alpha
Helix 7
AA7
A
240 243Right-handed 310
Helix 8
AA8
A
245 258Right-handed alpha
Helix 9
AA9
A
260 272Right-handed alpha
Helix 10
AB1
A
276 285Right-handed alpha
Helix 11
AB2
A
292 312Right-handed alpha
Helix 12
AB3
A
366 370Right-handed 310
Helix 13
AB4
A
385 398Right-handed alpha
Helix 14
AB5
A
420 435Right-handed alpha
Helix 15
AB6
A
447 459Right-handed alpha
Helix 16
AB7
A
467 473Right-handed alpha
Helix 17
AB8
A
491 502Right-handed alpha
Helix 18
AB9
B
66 85Right-handed alpha
Helix 19
AC1
B
101 104Right-handed 310
Helix 20
AC2
B
131 143Right-handed alpha
Helix 21
AC3
B
185 202Right-handed alpha
Helix 22
AC4
B
295 312Right-handed alpha
Helix 23
AC5
B
314 316Right-handed 310
Helix 24
AC6
B
385 397Right-handed alpha
Helix 25
AC7
B
420 434Right-handed alpha
Helix 26
AC8
B
447 459Right-handed alpha
Helix 27
AC9
B
467 472Right-handed alpha
Helix 28
AD1
B
491 501Right-handed alpha
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There are 6 sheets in PDB entry 5W6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
147 156parallel
Strand 3
A
170 179anti-parallel
Strand 4
A
379 384anti-parallel
Strand 5
A
356 362anti-parallel
Strand 6
A
334 340anti-parallel
Strand 7
A
207 213anti-parallel
Strand 8
A
318 321parallel
Strand 9
A
274 275anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
126 127anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
411 414parallel
Strand 3
A
462 465parallel
Strand 4
A
475 480anti-parallel
Strand 5
A
488 490anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 91first strand
Strand 2
B
147 156parallel
Strand 3
B
170 179anti-parallel
Strand 4
B
380 384anti-parallel
Strand 5
B
358 362anti-parallel
Strand 6
B
334 338anti-parallel
Strand 7
B
209 213anti-parallel
Strand 8
B
318 320parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 99first strand
Strand 2
B
125 127anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 440first strand
Strand 2
B
411 414parallel
Strand 3
B
462 465parallel
Strand 4
B
475 480anti-parallel
Strand 5
B
486 490anti-parallel
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