Analysis of interatomic Contacts of Structural Units in PDB entry:
5W6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W6S entry

There is 1 chain in PDB entry 5W6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 246ILE 921
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5W6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
246 256Right-handed alpha
Helix 2
AA2
A
259 264Right-handed 310
Helix 3
AA3
A
269 275Right-handed alpha
Helix 4
AA4
A
335 340Right-handed 310
Helix 5
AA5
A
348 357Right-handed alpha
Helix 6
AA6
A
542 546Right-handed 310
Helix 7
AA7
A
622 628Right-handed alpha
Helix 8
AA8
A
683 687Right-handed 310
Helix 9
AA9
A
711 715Right-handed 310
Helix 10
AB1
A
805 809Right-handed 310
Helix 11
AB2
A
847 849Right-handed 310
Helix 12
AB3
A
853 858Right-handed 310
Helix 13
AB4
A
890 899Right-handed alpha
Helix 14
AB5
A
907 909Right-handed 310
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There are 8 sheets in PDB entry 5W6S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 287first strand
Strand 2
A
299 304anti-parallel
Strand 3
A
325 328anti-parallel
Strand 4
A
317 319anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 363first strand
Strand 2
A
382 383parallel
Strand 3
A
413 420parallel
Strand 4
A
458 469parallel
Strand 5
A
483 488parallel
Strand 6
A
505 517parallel
Strand 7
A
528 538parallel
Strand 8
A
560 570parallel
Strand 9
A
585 593parallel
Strand 10
A
612 619parallel
Strand 11
A
646 651parallel
Strand 12
A
675 678parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 370first strand
Strand 2
A
391 394parallel
Strand 3
A
413 420parallel
Strand 4
A
458 469parallel
Strand 5
A
491 495parallel
Strand 6
A
505 517parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 469first strand
Strand 2
A
483 488parallel
Strand 3
A
505 517parallel
Strand 4
A
491 495parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
400 405parallel
Strand 3
A
434 439parallel
Strand 4
A
474 478parallel
Strand 5
A
498 502parallel
Strand 6
A
522 525parallel
Strand 7
A
554 557parallel
Strand 8
A
577 580parallel
Strand 9
A
604 609parallel
Strand 10
A
636 640parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 699first strand
Strand 2
A
729 735anti-parallel
Strand 3
A
862 865anti-parallel
Strand 4
A
755 762anti-parallel
Strand 5
A
772 779anti-parallel
Strand 6
A
785 793anti-parallel
Strand 7
A
796 803anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
718 722anti-parallel
Strand 3
A
878 887anti-parallel
Strand 4
A
741 749anti-parallel
Strand 5
A
816 823anti-parallel
Strand 6
A
826 833anti-parallel
Strand 7
A
839 845anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
718 722anti-parallel
Strand 3
A
878 887anti-parallel
Strand 4
A
911 915anti-parallel
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