Analysis of interatomic Contacts of Structural Units in PDB entry:
5W70


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W70 entry

There are 2 chains in PDB entry 5W70 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ARG 417
B
 GLN 4ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5W70. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
27 38Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
75 87Right-handed alpha
Helix 5
AA5
A
103 112Right-handed alpha
Helix 6
AA6
A
129 137Right-handed alpha
Helix 7
AA7
A
155 167Right-handed alpha
Helix 8
AA8
A
216 228Right-handed alpha
Helix 9
AA9
A
259 271Right-handed alpha
Helix 10
AB1
A
272 294Right-handed alpha
Helix 11
AB2
A
326 339Right-handed alpha
Helix 12
AB3
A
348 352Right-handed 310
Helix 13
AB4
A
356 364Right-handed 310
Helix 14
AB5
A
366 374Right-handed alpha
Helix 15
AB6
A
375 378Right-handed 310
Helix 16
AB7
A
380 389Right-handed alpha
Helix 17
AB8
A
396 399Right-handed 310
Helix 18
AB9
A
401 417Right-handed alpha
Helix 19
AC1
B
27 37Right-handed alpha
Helix 20
AC2
B
52 65Right-handed alpha
Helix 21
AC3
B
75 87Right-handed alpha
Helix 22
AC4
B
103 112Right-handed alpha
Helix 23
AC5
B
129 137Right-handed alpha
Helix 24
AC6
B
155 167Right-handed alpha
Helix 25
AC7
B
216 228Right-handed alpha
Helix 26
AC8
B
259 271Right-handed alpha
Helix 27
AC9
B
272 294Right-handed alpha
Helix 28
AD1
B
326 339Right-handed alpha
Helix 29
AD2
B
348 352Right-handed 310
Helix 30
AD3
B
356 364Right-handed 310
Helix 31
AD4
B
366 373Right-handed alpha
Helix 32
AD5
B
374 378Right-handed 310
Helix 33
AD6
B
380 389Right-handed alpha
Helix 34
AD7
B
396 400Right-handed 310
Helix 35
AD8
B
401 416Right-handed alpha
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There are 8 sheets in PDB entry 5W70. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
210 214anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
170 173parallel
Strand 5
A
141 147parallel
Strand 6
A
94 98parallel
Strand 7
A
115 119parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
181 182anti-parallel
Strand 3
A
305 307anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 233first strand
Strand 2
A
245 246anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
312 316anti-parallel
Strand 3
A
390 394anti-parallel
Strand 4
A
343 344anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
170 173parallel
Strand 5
B
141 147parallel
Strand 6
B
94 98parallel
Strand 7
B
115 119parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
181 182anti-parallel
Strand 3
B
305 307anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 233first strand
Strand 2
B
245 246anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
297 298first strand
Strand 2
B
312 316anti-parallel
Strand 3
B
390 394anti-parallel
Strand 4
B
342 344anti-parallel
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