Analysis of interatomic Contacts of Structural Units in PDB entry:
5W71


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W71 entry

There are 2 chains in PDB entry 5W71 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3CYS 415
B
 HIS 7CYS 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5W71. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 29Right-handed alpha
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
65 77Right-handed alpha
Helix 4
AA4
A
93 102Right-handed alpha
Helix 5
AA5
A
119 127Right-handed 310
Helix 6
AA6
A
145 156Right-handed alpha
Helix 7
AA7
A
206 218Right-handed alpha
Helix 8
AA8
A
251 284Right-handed alpha
Helix 9
AA9
A
312 315Right-handed 310
Helix 10
AB1
A
319 332Right-handed alpha
Helix 11
AB2
A
344 348Right-handed 310
Helix 12
AB3
A
352 356Right-handed 310
Helix 13
AB4
A
360 365Right-handed alpha
Helix 14
AB5
A
366 372Right-handed alpha
Helix 15
AB6
A
375 384Right-handed alpha
Helix 16
AB7
A
391 395Right-handed 310
Helix 17
AB8
A
396 414Right-handed alpha
Helix 18
AB9
B
15 29Right-handed alpha
Helix 19
AC1
B
42 56Right-handed alpha
Helix 20
AC2
B
65 77Right-handed alpha
Helix 21
AC3
B
93 102Right-handed alpha
Helix 22
AC4
B
119 127Right-handed alpha
Helix 23
AC5
B
145 157Right-handed alpha
Helix 24
AC6
B
206 218Right-handed alpha
Helix 25
AC7
B
226 230Right-handed 310
Helix 26
AC8
B
251 263Right-handed alpha
Helix 27
AC9
B
264 285Right-handed alpha
Helix 28
AD1
B
312 315Right-handed 310
Helix 29
AD2
B
319 332Right-handed alpha
Helix 30
AD3
B
344 348Right-handed 310
Helix 31
AD4
B
352 356Right-handed 310
Helix 32
AD5
B
360 365Right-handed alpha
Helix 33
AD6
B
366 372Right-handed alpha
Helix 34
AD7
B
375 384Right-handed alpha
Helix 35
AD8
B
391 395Right-handed 310
Helix 36
AD9
B
396 414Right-handed alpha
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There are 8 sheets in PDB entry 5W71. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 63first strand
Strand 2
A
200 204anti-parallel
Strand 3
A
183 187anti-parallel
Strand 4
A
159 163parallel
Strand 5
A
131 134parallel
Strand 6
A
84 88parallel
Strand 7
A
105 109parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
171 172anti-parallel
Strand 3
A
298 300anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
237 239anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 291first strand
Strand 2
A
305 310anti-parallel
Strand 3
A
385 389anti-parallel
Strand 4
A
338 339anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 63first strand
Strand 2
B
200 204anti-parallel
Strand 3
B
183 187anti-parallel
Strand 4
B
159 163parallel
Strand 5
B
131 134parallel
Strand 6
B
84 88parallel
Strand 7
B
105 109parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
171 172anti-parallel
Strand 3
B
298 300anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
237 239anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
305 310anti-parallel
Strand 3
B
385 389anti-parallel
Strand 4
B
338 339anti-parallel
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