Analysis of interatomic Contacts of Structural Units in PDB entry:
5W78


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W78 entry

There are 2 chains in PDB entry 5W78 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 35TYR 152
B
 ASP 158HIS 575
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5W78. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 59Right-handed alpha
Helix 2
AA2
A
61 73Right-handed alpha
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
78 100Right-handed alpha
Helix 5
AA5
A
103 111Right-handed alpha
Helix 6
AA6
A
132 146Right-handed alpha
Helix 7
AA7
B
158 164Right-handed 310
Helix 8
AA8
B
165 178Right-handed alpha
Helix 9
AA9
B
179 180Right-handed 310
Helix 10
AB1
B
193 198Right-handed 310
Helix 11
AB2
B
219 224Right-handed 310
Helix 12
AB3
B
243 250Right-handed alpha
Helix 13
AB4
B
271 275Right-handed 310
Helix 14
AB5
B
276 280Right-handed 310
Helix 15
AB6
B
281 286Right-handed 310
Helix 16
AB7
B
287 293Right-handed alpha
Helix 17
AB8
B
298 302Right-handed 310
Helix 18
AB9
B
318 327Right-handed alpha
Helix 19
AC1
B
328 331Right-handed 310
Helix 20
AC2
B
346 354Right-handed 310
Helix 21
AC3
B
388 405Right-handed alpha
Helix 22
AC4
B
422 429Right-handed alpha
Helix 23
AC5
B
433 437Right-handed 310
Helix 24
AC6
B
443 455Right-handed alpha
Helix 25
AC7
B
466 491Right-handed alpha
Helix 26
AC8
B
504 515Right-handed alpha
Helix 27
AC9
B
518 523Right-handed 310
Helix 28
AD1
B
532 551Right-handed alpha
Helix 29
AD2
B
552 555Right-handed 310
Helix 30
AD3
B
561 570Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5W78.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 338first strand
Strand 2
B
256 261parallel
Strand 3
B
364 369parallel
Strand 4
B
411 416parallel
Strand 5
B
496 501parallel
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