Analysis of interatomic Contacts of Structural Units in PDB entry:
5W7E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W7E entry

There are 2 chains in PDB entry 5W7E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35HIS 574
B
 SER 35LYS 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 5W7E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 58Right-handed alpha
Helix 2
AA2
A
60 72Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 99Right-handed alpha
Helix 5
AA5
A
102 110Right-handed alpha
Helix 6
AA6
A
128 143Right-handed alpha
Helix 7
AA7
A
164 178Right-handed alpha
Helix 8
AA8
A
218 223Right-handed 310
Helix 9
AA9
A
242 249Right-handed alpha
Helix 10
AB1
A
270 274Right-handed 310
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
280 285Right-handed 310
Helix 13
AB4
A
286 293Right-handed alpha
Helix 14
AB5
A
297 301Right-handed 310
Helix 15
AB6
A
317 326Right-handed alpha
Helix 16
AB7
A
327 330Right-handed 310
Helix 17
AB8
A
345 353Right-handed 310
Helix 18
AB9
A
381 385Right-handed 310
Helix 19
AC1
A
387 404Right-handed alpha
Helix 20
AC2
A
421 428Right-handed alpha
Helix 21
AC3
A
432 437Right-handed alpha
Helix 22
AC4
A
442 453Right-handed alpha
Helix 23
AC5
A
465 490Right-handed alpha
Helix 24
AC6
A
503 514Right-handed alpha
Helix 25
AC7
A
517 522Right-handed 310
Helix 26
AC8
A
531 550Right-handed alpha
Helix 27
AC9
A
551 554Right-handed 310
Helix 28
AD1
A
560 569Right-handed alpha
Helix 29
AD2
B
36 57Right-handed alpha
Helix 30
AD3
B
60 72Right-handed alpha
Helix 31
AD4
B
74 76Right-handed 310
Helix 32
AD5
B
77 99Right-handed alpha
Helix 33
AD6
B
102 110Right-handed alpha
Helix 34
AD7
B
131 144Right-handed alpha
Helix 35
AD8
B
161 178Right-handed alpha
Helix 36
AD9
B
218 223Right-handed 310
Helix 37
AE1
B
242 249Right-handed alpha
Helix 38
AE2
B
270 274Right-handed 310
Helix 39
AE3
B
275 279Right-handed 310
Helix 40
AE4
B
280 285Right-handed 310
Helix 41
AE5
B
286 293Right-handed alpha
Helix 42
AE6
B
297 301Right-handed 310
Helix 43
AE7
B
317 326Right-handed alpha
Helix 44
AE8
B
327 330Right-handed 310
Helix 45
AE9
B
345 353Right-handed 310
Helix 46
AF1
B
381 385Right-handed 310
Helix 47
AF2
B
387 406Right-handed alpha
Helix 48
AF3
B
420 428Right-handed alpha
Helix 49
AF4
B
432 436Right-handed 310
Helix 50
AF5
B
442 453Right-handed alpha
Helix 51
AF6
B
465 490Right-handed alpha
Helix 52
AF7
B
503 514Right-handed alpha
Helix 53
AF8
B
517 522Right-handed 310
Helix 54
AF9
B
531 550Right-handed alpha
Helix 55
AG1
B
551 554Right-handed 310
Helix 56
AG2
B
560 569Right-handed alpha
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There are 2 sheets in PDB entry 5W7E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
255 260parallel
Strand 3
A
363 368parallel
Strand 4
A
410 415parallel
Strand 5
A
495 500parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 337first strand
Strand 2
B
255 260parallel
Strand 3
B
363 368parallel
Strand 4
B
410 415parallel
Strand 5
B
495 500parallel
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