Analysis of interatomic Contacts of Structural Units in PDB entry:
5W7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W7F entry

There are 2 chains in PDB entry 5W7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35HIS 574
B
 SER 35HIS 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5W7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 57Right-handed alpha
Helix 2
AA2
A
60 72Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 99Right-handed alpha
Helix 5
AA5
A
102 110Right-handed alpha
Helix 6
AA6
A
128 144Right-handed alpha
Helix 7
AA7
A
164 177Right-handed alpha
Helix 8
AA8
A
242 249Right-handed alpha
Helix 9
AA9
A
270 274Right-handed 310
Helix 10
AB1
A
275 279Right-handed 310
Helix 11
AB2
A
280 285Right-handed 310
Helix 12
AB3
A
286 292Right-handed alpha
Helix 13
AB4
A
297 301Right-handed 310
Helix 14
AB5
A
317 326Right-handed alpha
Helix 15
AB6
A
327 330Right-handed 310
Helix 16
AB7
A
346 351Right-handed alpha
Helix 17
AB8
A
380 385Right-handed alpha
Helix 18
AB9
A
387 404Right-handed alpha
Helix 19
AC1
A
420 428Right-handed alpha
Helix 20
AC2
A
432 437Right-handed alpha
Helix 21
AC3
A
442 453Right-handed alpha
Helix 22
AC4
A
465 490Right-handed alpha
Helix 23
AC5
A
503 514Right-handed alpha
Helix 24
AC6
A
517 522Right-handed 310
Helix 25
AC7
A
531 550Right-handed alpha
Helix 26
AC8
A
550 555Right-handed alpha
Helix 27
AC9
A
560 569Right-handed alpha
Helix 28
AD1
B
36 57Right-handed alpha
Helix 29
AD2
B
60 72Right-handed alpha
Helix 30
AD3
B
74 76Right-handed 310
Helix 31
AD4
B
77 98Right-handed alpha
Helix 32
AD5
B
102 110Right-handed alpha
Helix 33
AD6
B
131 144Right-handed alpha
Helix 34
AD7
B
161 178Right-handed alpha
Helix 35
AD8
B
243 249Right-handed alpha
Helix 36
AD9
B
270 274Right-handed 310
Helix 37
AE1
B
275 279Right-handed 310
Helix 38
AE2
B
280 284Right-handed 310
Helix 39
AE3
B
286 292Right-handed alpha
Helix 40
AE4
B
297 301Right-handed 310
Helix 41
AE5
B
317 326Right-handed alpha
Helix 42
AE6
B
327 330Right-handed 310
Helix 43
AE7
B
345 353Right-handed 310
Helix 44
AE8
B
380 385Right-handed alpha
Helix 45
AE9
B
387 404Right-handed alpha
Helix 46
AF1
B
420 428Right-handed alpha
Helix 47
AF2
B
432 436Right-handed 310
Helix 48
AF3
B
442 453Right-handed alpha
Helix 49
AF4
B
465 490Right-handed alpha
Helix 50
AF5
B
503 513Right-handed alpha
Helix 51
AF6
B
517 522Right-handed 310
Helix 52
AF7
B
531 550Right-handed alpha
Helix 53
AF8
B
550 555Right-handed alpha
Helix 54
AF9
B
560 569Right-handed alpha
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There are 3 sheets in PDB entry 5W7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
255 260parallel
Strand 3
A
363 368parallel
Strand 4
A
410 415parallel
Strand 5
A
495 500parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 236first strand
Strand 2
B
241 242anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 337first strand
Strand 2
B
255 260parallel
Strand 3
B
363 368parallel
Strand 4
B
410 415parallel
Strand 5
B
495 500parallel
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