Analysis of interatomic Contacts of Structural Units in PDB entry:
5W7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W7S entry

There is 1 chain in PDB entry 5W7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8LYS 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5W7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
38 56Right-handed alpha
Helix 3
AA3
A
56 62Right-handed alpha
Helix 4
AA4
A
62 80Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
87 90Right-handed 310
Helix 7
AA7
A
95 103Right-handed alpha
Helix 8
AA8
A
105 114Right-handed alpha
Helix 9
AA9
A
133 138Right-handed alpha
Helix 10
AB1
A
141 155Right-handed alpha
Helix 11
AB2
A
155 169Right-handed alpha
Helix 12
AB3
A
180 186Right-handed alpha
Helix 13
AB4
A
192 200Right-handed alpha
Helix 14
AB5
A
203 213Right-handed alpha
Helix 15
AB6
A
224 230Right-handed alpha
Helix 16
AB7
A
247 257Right-handed alpha
Helix 17
AB8
A
270 284Right-handed alpha
Helix 18
AB9
A
311 315Right-handed 310
Helix 19
AC1
A
319 330Right-handed alpha
Helix 20
AC2
A
352 364Right-handed alpha
Helix 21
AC3
A
372 382Right-handed alpha
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There are 3 sheets in PDB entry 5W7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
122 126anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
264 269parallel
Strand 3
A
238 242parallel
Strand 4
A
305 309parallel
Strand 5
A
339 346parallel
Strand 6
A
370 371parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 290first strand
Strand 2
A
264 269parallel
Strand 3
A
238 242parallel
Strand 4
A
305 309parallel
Strand 5
A
339 346parallel
Strand 6
A
397 404anti-parallel
Strand 7
A
384 390anti-parallel
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