Analysis of interatomic Contacts of Structural Units in PDB entry:
5W7T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W7T entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 5W7T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 206LYS 381
A
 VAL 383GLU 482
B
 GLY 206LYS 381
B
 VAL 383GLU 482
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 5W7T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
206 209Right-handed 310
Helix 2
AA2
A
258 273Right-handed alpha
Helix 3
AA3
A
308 317Right-handed alpha
Helix 4
AA4
A
320 340Right-handed alpha
Helix 5
AA5
A
351 353Right-handed 310
Helix 6
AA6
A
371 378Right-handed alpha
Helix 7
AA7
A
379 381Right-handed 310
Helix 8
AA8
A
386 390Right-handed 310
Helix 9
AA9
A
391 395Right-handed 310
Helix 10
AB1
A
401 418Right-handed alpha
Helix 11
AB2
A
427 436Right-handed alpha
Helix 12
AB3
A
441 447Right-handed 310
Helix 13
AB4
A
449 460Right-handed alpha
Helix 14
AB5
A
463 467Right-handed 310
Helix 15
AB6
A
469 475Right-handed alpha
Helix 16
AB7
A
476 481Right-handed alpha
Helix 17
AB8
B
206 209Right-handed 310
Helix 18
AB9
B
258 274Right-handed alpha
Helix 19
AC1
B
308 317Right-handed alpha
Helix 20
AC2
B
320 340Right-handed alpha
Helix 21
AC3
B
351 353Right-handed 310
Helix 22
AC4
B
370 378Right-handed alpha
Helix 23
AC5
B
386 390Right-handed 310
Helix 24
AC6
B
391 396Right-handed 310
Helix 25
AC7
B
401 418Right-handed alpha
Helix 26
AC8
B
427 437Right-handed alpha
Helix 27
AC9
B
441 447Right-handed 310
Helix 28
AD1
B
449 460Right-handed alpha
Helix 29
AD2
B
463 467Right-handed 310
Helix 30
AD3
B
469 476Right-handed alpha
Helix 31
AD4
B
476 481Right-handed alpha
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There are 4 sheets in PDB entry 5W7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
220 229anti-parallel
Strand 3
A
233 240anti-parallel
Strand 4
A
246 252anti-parallel
Strand 5
A
294 302anti-parallel
Strand 6
A
283 291anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 357first strand
Strand 2
A
364 366anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
220 229anti-parallel
Strand 3
B
233 240anti-parallel
Strand 4
B
246 252anti-parallel
Strand 5
B
294 302anti-parallel
Strand 6
B
283 291anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 357first strand
Strand 2
B
364 366anti-parallel
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