Analysis of interatomic Contacts of Structural Units in PDB entry:
5W84


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W84 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5W84 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 165SER 336
A
 VAL 343MET 344
A
 ARG 347ALA 459
B
 PHE 168SER 336
B
 VAL 343MET 344
B
 ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5W84. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 177Right-handed alpha
Helix 2
AA2
A
184 188Right-handed 310
Helix 3
AA3
A
228 240Right-handed alpha
Helix 4
AA4
A
269 276Right-handed alpha
Helix 5
AA5
A
277 280Right-handed 310
Helix 6
AA6
A
284 305Right-handed alpha
Helix 7
AA7
A
313 315Right-handed 310
Helix 8
AA8
A
365 383Right-handed alpha
Helix 9
AA9
A
397 405Right-handed alpha
Helix 10
AB1
A
409 413Right-handed 310
Helix 11
AB2
A
422 437Right-handed alpha
Helix 12
AB3
A
440 444Right-handed 310
Helix 13
AB4
A
446 459Right-handed alpha
Helix 14
AB5
B
169 177Right-handed alpha
Helix 15
AB6
B
184 188Right-handed 310
Helix 16
AB7
B
232 240Right-handed alpha
Helix 17
AB8
B
269 276Right-handed alpha
Helix 18
AB9
B
284 305Right-handed alpha
Helix 19
AC1
B
365 383Right-handed alpha
Helix 20
AC2
B
397 405Right-handed alpha
Helix 21
AC3
B
409 413Right-handed 310
Helix 22
AC4
B
422 437Right-handed alpha
Helix 23
AC5
B
446 459Right-handed alpha
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There are 7 sheets in PDB entry 5W84. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
199 205anti-parallel
Strand 3
A
208 214anti-parallel
Strand 4
A
259 263anti-parallel
Strand 5
A
248 252anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
199 204anti-parallel
Strand 3
B
209 213anti-parallel
Strand 4
B
260 263anti-parallel
Strand 5
B
248 250anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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