Analysis of interatomic Contacts of Structural Units in PDB entry:
5W85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W85 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5W85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 164SER 336
A
 VAL 343MET 344
A
 ARG 347THR 458
B
 ARG 164GLN 341
B
 VAL 343MET 344
B
 ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5W85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
169 177Right-handed alpha
Helix 2
AA2
A
184 188Right-handed 310
Helix 3
AA3
A
225 240Right-handed alpha
Helix 4
AA4
A
269 275Right-handed alpha
Helix 5
AA5
A
276 280Right-handed 310
Helix 6
AA6
A
284 305Right-handed alpha
Helix 7
AA7
A
313 315Right-handed 310
Helix 8
AA8
A
351 355Right-handed 310
Helix 9
AA9
A
356 362Right-handed alpha
Helix 10
AB1
A
366 383Right-handed alpha
Helix 11
AB2
A
397 405Right-handed alpha
Helix 12
AB3
A
409 413Right-handed 310
Helix 13
AB4
A
422 437Right-handed alpha
Helix 14
AB5
A
440 444Right-handed 310
Helix 15
AB6
A
446 458Right-handed alpha
Helix 16
AB7
B
169 177Right-handed alpha
Helix 17
AB8
B
225 240Right-handed alpha
Helix 18
AB9
B
269 275Right-handed alpha
Helix 19
AC1
B
276 280Right-handed 310
Helix 20
AC2
B
284 305Right-handed alpha
Helix 21
AC3
B
313 315Right-handed 310
Helix 22
AC4
B
351 355Right-handed 310
Helix 23
AC5
B
356 362Right-handed alpha
Helix 24
AC6
B
366 383Right-handed alpha
Helix 25
AC7
B
395 397Right-handed 310
Helix 26
AC8
B
398 405Right-handed alpha
Helix 27
AC9
B
409 413Right-handed 310
Helix 28
AD1
B
422 437Right-handed alpha
Helix 29
AD2
B
440 444Right-handed 310
Helix 30
AD3
B
446 459Right-handed alpha
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There are 8 sheets in PDB entry 5W85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 214anti-parallel
Strand 5
A
199 205anti-parallel
Strand 6
A
191 193anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
258 263anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
199 205anti-parallel
Strand 6
B
191 193anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
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