Analysis of interatomic Contacts of Structural Units in PDB entry:
5W87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W87 entry

There are 2 chains in PDB entry 5W87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 905ASN 1010
B
 TYR 906ASN 1009
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5W87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
907 914Right-handed alpha
Helix 2
AA2
A
925 936Right-handed alpha
Helix 3
AA3
A
939 951Right-handed alpha
Helix 4
AA4
A
957 964Right-handed alpha
Helix 5
AA5
A
996 1009Right-handed alpha
Helix 6
AA6
B
907 914Right-handed alpha
Helix 7
AA7
B
925 938Right-handed alpha
Helix 8
AA8
B
939 951Right-handed alpha
Helix 9
AA9
B
970 974Right-handed 310
Helix 10
AB1
B
996 1008Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5W87.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
916 917first strand
Strand 2
A
967 969parallel
Strand 3
B
984 990parallel
Strand 4
A
984 990anti-parallel
Strand 5
B
967 969parallel
Strand 6
B
916 917parallel
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