Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W8P entry

There are 2 chains in PDB entry 5W8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 10LYS 379
B
 GLY 10ALA 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5W8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
125 129Right-handed 310
Helix 2
AA2
A
133 148Right-handed alpha
Helix 3
AA3
A
160 173Right-handed alpha
Helix 4
AA4
A
190 206Right-handed alpha
Helix 5
AA5
A
210 214Right-handed 310
Helix 6
AA6
A
222 238Right-handed alpha
Helix 7
AA7
A
239 247Right-handed alpha
Helix 8
AA8
A
267 282Right-handed alpha
Helix 9
AA9
A
285 298Right-handed alpha
Helix 10
AB1
A
307 314Right-handed alpha
Helix 11
AB2
A
331 342Right-handed alpha
Helix 12
AB3
A
355 357Right-handed 310
Helix 13
AB4
A
358 363Right-handed alpha
Helix 14
AB5
A
363 379Right-handed alpha
Helix 15
AB6
B
125 129Right-handed 310
Helix 16
AB7
B
133 148Right-handed alpha
Helix 17
AB8
B
160 173Right-handed alpha
Helix 18
AB9
B
190 206Right-handed alpha
Helix 19
AC1
B
207 214Right-handed 310
Helix 20
AC2
B
222 238Right-handed alpha
Helix 21
AC3
B
239 247Right-handed alpha
Helix 22
AC4
B
267 282Right-handed alpha
Helix 23
AC5
B
285 298Right-handed alpha
Helix 24
AC6
B
307 314Right-handed alpha
Helix 25
AC7
B
331 342Right-handed alpha
Helix 26
AC8
B
355 357Right-handed 310
Helix 27
AC9
B
358 363Right-handed alpha
Helix 28
AD1
B
363 378Right-handed alpha
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There are 6 sheets in PDB entry 5W8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 29first strand
Strand 2
A
35 46anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
56 60parallel
Strand 5
A
153 159parallel
Strand 6
A
177 183parallel
Strand 7
A
319 324parallel
Strand 8
A
349 351parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
93 94parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 254first strand
Strand 2
A
257 258anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 29first strand
Strand 2
B
35 46anti-parallel
Strand 3
B
99 103anti-parallel
Strand 4
B
56 60parallel
Strand 5
B
153 159parallel
Strand 6
B
177 183parallel
Strand 7
B
319 324parallel
Strand 8
B
349 351parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 88first strand
Strand 2
B
93 94parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 254first strand
Strand 2
B
257 258anti-parallel
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