Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W8Q entry

There are 4 chains in PDB entry 5W8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 10GLY 158
A
 TYR 160CYS 388
B
 GLN 10GLY 158
B
 TYR 160GLU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5W8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 39Right-handed alpha
Helix 2
AA2
A
44 58Right-handed alpha
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
76 80Right-handed 310
Helix 5
AA5
A
85 113Right-handed alpha
Helix 6
AA6
A
115 119Right-handed 310
Helix 7
AA7
A
134 144Right-handed alpha
Helix 8
AA8
A
160 176Right-handed alpha
Helix 9
AA9
A
188 193Right-handed 310
Helix 10
AB1
A
201 210Right-handed alpha
Helix 11
AB2
A
265 283Right-handed alpha
Helix 12
AB3
A
291 295Right-handed 310
Helix 13
AB4
A
303 314Right-handed alpha
Helix 14
AB5
A
321 332Right-handed alpha
Helix 15
AB6
A
337 354Right-handed alpha
Helix 16
AB7
B
30 39Right-handed alpha
Helix 17
AB8
B
44 58Right-handed alpha
Helix 18
AB9
B
68 75Right-handed alpha
Helix 19
AC1
B
76 80Right-handed 310
Helix 20
AC2
B
85 113Right-handed alpha
Helix 21
AC3
B
115 119Right-handed 310
Helix 22
AC4
B
134 144Right-handed alpha
Helix 23
AC5
B
160 176Right-handed alpha
Helix 24
AC6
B
188 193Right-handed 310
Helix 25
AC7
B
201 210Right-handed alpha
Helix 26
AC8
B
265 283Right-handed alpha
Helix 27
AC9
B
291 295Right-handed 310
Helix 28
AD1
B
303 314Right-handed alpha
Helix 29
AD2
B
321 332Right-handed alpha
Helix 30
AD3
B
337 354Right-handed alpha
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There are 6 sheets in PDB entry 5W8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
121 126parallel
Strand 3
A
181 187parallel
Strand 4
A
213 220anti-parallel
Strand 5
A
13 20anti-parallel
Strand 6
A
232 241anti-parallel
Strand 7
A
375 383anti-parallel
Strand 8
A
364 371anti-parallel
Strand 9
A
296 299parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 27first strand
Strand 2
A
62 64anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
B
249 254anti-parallel
Strand 3
B
257 262anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 262first strand
Strand 2
A
249 254anti-parallel
Strand 3
B
131 132anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 155first strand
Strand 2
B
121 126parallel
Strand 3
B
181 187parallel
Strand 4
B
213 220anti-parallel
Strand 5
B
13 20anti-parallel
Strand 6
B
232 241anti-parallel
Strand 7
B
375 383anti-parallel
Strand 8
B
364 371anti-parallel
Strand 9
B
296 299parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 27first strand
Strand 2
B
62 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il