Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W8S entry

There is 1 chain in PDB entry 5W8S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLN 382
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5W8S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
43 49Right-handed alpha
Helix 3
AA3
A
58 61Right-handed 310
Helix 4
AA4
A
73 90Right-handed alpha
Helix 5
AA5
A
99 113Right-handed alpha
Helix 6
AA6
A
129 140Right-handed alpha
Helix 7
AA7
A
147 157Right-handed alpha
Helix 8
AA8
A
166 172Right-handed alpha
Helix 9
AA9
A
177 186Right-handed alpha
Helix 10
AB1
A
201 223Right-handed alpha
Helix 11
AB2
A
234 249Right-handed alpha
Helix 12
AB3
A
260 268Right-handed alpha
Helix 13
AB4
A
277 285Right-handed alpha
Helix 14
AB5
A
296 310Right-handed alpha
Helix 15
AB6
A
313 320Right-handed alpha
Helix 16
AB7
A
328 332Right-handed 310
Helix 17
AB8
A
333 346Right-handed alpha
Helix 18
AB9
A
348 365Right-handed alpha
Helix 19
AC1
A
368 382Right-handed alpha
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There are 2 sheets in PDB entry 5W8S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
37 42parallel
Strand 3
A
8 13parallel
Strand 4
A
93 97parallel
Strand 5
A
117 120parallel
Strand 6
A
142 145parallel
Strand 7
A
161 163parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
227 232parallel
Strand 3
A
193 197parallel
Strand 4
A
270 273parallel
Strand 5
A
289 291parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il