Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W8T entry

There are 4 chains in PDB entry 5W8T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 80	GLY 156
A	LEU 2	ASP 320
D	GLU 80	GLY 156
C	LEU 2	ASP 320

There are 28 helices in PDB entry 5W8T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	103	115	Right-handed alpha
Helix 2	AA2	B	118	120	Right-handed 310
Helix 3	AA3	B	136	141	Right-handed 310
Helix 4	AA4	A	25	30	Right-handed alpha
Helix 5	AA5	A	46	50	Right-handed 310
Helix 6	AA6	A	61	73	Right-handed alpha
Helix 7	AA7	A	78	90	Right-handed alpha
Helix 8	AA8	A	91	93	Right-handed 310
Helix 9	AA9	A	110	123	Right-handed alpha
Helix 10	AB1	A	130	141	Right-handed alpha
Helix 11	AB2	A	145	156	Right-handed alpha
Helix 12	AB3	A	165	175	Right-handed alpha
Helix 13	AB4	A	204	206	Right-handed 310
Helix 14	AB5	A	214	220	Right-handed alpha
Helix 15	AB6	D	103	115	Right-handed alpha
Helix 16	AB7	D	118	120	Right-handed 310
Helix 17	AB8	D	136	141	Right-handed 310
Helix 18	AB9	C	25	30	Right-handed alpha
Helix 19	AC1	C	46	50	Right-handed 310
Helix 20	AC2	C	61	73	Right-handed alpha
Helix 21	AC3	C	78	90	Right-handed alpha
Helix 22	AC4	C	91	93	Right-handed 310
Helix 23	AC5	C	110	123	Right-handed alpha
Helix 24	AC6	C	130	141	Right-handed alpha
Helix 25	AC7	C	145	157	Right-handed alpha
Helix 26	AC8	C	165	175	Right-handed alpha
Helix 27	AC9	C	204	206	Right-handed 310
Helix 28	AD1	C	214	220	Right-handed alpha

There are 14 sheets in PDB entry 5W8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	122	126	anti-parallel
Strand 5	B	129	130	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	21	first strand
Strand 2	A	3	9	anti-parallel
Strand 3	A	53	56	parallel
Strand 4	A	33	35	anti-parallel
Strand 5	A	38	39	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	101	104	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	202	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	231	241	anti-parallel
Strand 4	A	222	225	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	202	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	231	241	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	244	256	parallel
Strand 3	A	302	312	anti-parallel
Strand 4	A	265	270	anti-parallel
Strand 5	A	278	285	anti-parallel
Strand 6	A	288	292	anti-parallel
Strand 7	A	297	300	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	98	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	147	152	parallel
Strand 4	D	122	126	anti-parallel
Strand 5	D	129	130	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	21	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	53	56	parallel
Strand 4	C	33	35	anti-parallel
Strand 5	C	38	39	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	101	104	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	177	179	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	202	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	231	241	anti-parallel
Strand 4	C	222	225	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	202	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	231	241	anti-parallel
Strand 4	C	315	318	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	244	256	parallel
Strand 3	C	302	312	anti-parallel
Strand 4	C	265	270	anti-parallel
Strand 5	C	278	285	anti-parallel
Strand 6	C	288	292	anti-parallel
Strand 7	C	297	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W8T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8T