Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5W8U entry

There are 4 chains in PDB entry 5W8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ASP 320
B	MET 79	GLY 156
C	LEU 2	ASP 320
D	MET 79	GLY 156

There are 25 helices in PDB entry 5W8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	61	73	Right-handed alpha
Helix 4	AA4	A	78	90	Right-handed alpha
Helix 5	AA5	A	110	121	Right-handed alpha
Helix 6	AA6	A	130	143	Right-handed alpha
Helix 7	AA7	A	145	156	Right-handed alpha
Helix 8	AA8	A	165	175	Right-handed alpha
Helix 9	AA9	A	204	206	Right-handed 310
Helix 10	AB1	A	214	220	Right-handed alpha
Helix 11	AB2	B	103	116	Right-handed alpha
Helix 12	AB3	B	118	120	Right-handed 310
Helix 13	AB4	B	136	141	Right-handed 310
Helix 14	AB5	C	25	30	Right-handed alpha
Helix 15	AB6	C	61	73	Right-handed alpha
Helix 16	AB7	C	78	90	Right-handed alpha
Helix 17	AB8	C	110	121	Right-handed alpha
Helix 18	AB9	C	130	142	Right-handed alpha
Helix 19	AC1	C	145	156	Right-handed alpha
Helix 20	AC2	C	165	175	Right-handed alpha
Helix 21	AC3	C	204	206	Right-handed 310
Helix 22	AC4	C	214	220	Right-handed alpha
Helix 23	AC5	D	103	116	Right-handed alpha
Helix 24	AC6	D	118	120	Right-handed 310
Helix 25	AC7	D	136	141	Right-handed 310

There are 14 sheets in PDB entry 5W8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	3	9	anti-parallel
Strand 3	A	53	56	parallel
Strand 4	A	33	35	anti-parallel
Strand 5	A	38	39	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	101	104	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	177	179	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	202	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	231	241	anti-parallel
Strand 4	A	222	225	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	202	first strand
Strand 2	A	184	191	anti-parallel
Strand 3	A	231	241	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	244	256	parallel
Strand 3	A	302	312	anti-parallel
Strand 4	A	265	270	anti-parallel
Strand 5	A	278	285	anti-parallel
Strand 6	A	288	293	anti-parallel
Strand 7	A	296	300	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	82	87	anti-parallel
Strand 3	B	147	152	parallel
Strand 4	B	122	126	anti-parallel
Strand 5	B	129	130	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	21	first strand
Strand 2	C	3	9	anti-parallel
Strand 3	C	53	56	parallel
Strand 4	C	33	35	anti-parallel
Strand 5	C	38	39	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	101	104	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	128	first strand
Strand 2	C	177	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	202	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	231	241	anti-parallel
Strand 4	C	222	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	202	first strand
Strand 2	C	184	191	anti-parallel
Strand 3	C	231	241	anti-parallel
Strand 4	C	315	318	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	244	256	parallel
Strand 3	C	302	312	anti-parallel
Strand 4	C	265	270	anti-parallel
Strand 5	C	278	285	anti-parallel
Strand 6	C	288	293	anti-parallel
Strand 7	C	296	300	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	98	first strand
Strand 2	D	82	87	anti-parallel
Strand 3	D	147	152	parallel
Strand 4	D	122	126	anti-parallel
Strand 5	D	129	130	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5W8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5W8U