Analysis of interatomic Contacts of Structural Units in PDB entry:
5W94


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W94 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 5W94 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2VAL 622
B
 SER 2LYS 133
C
 LYS 7SER 621
D
 TYR 3SER 134
E
 PHE 3PHE 3
E
 ASP 6ASP 6
H
 PHE 3PHE 3
H
 ASP 6ASP 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 5W94. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 28Right-handed alpha
Helix 2
AA2
A
29 31Right-handed 310
Helix 3
AA3
A
33 57Right-handed alpha
Helix 4
AA4
A
61 80Right-handed alpha
Helix 5
AA5
A
82 98Right-handed alpha
Helix 6
AA6
A
106 119Right-handed alpha
Helix 7
AA7
A
119 126Right-handed alpha
Helix 8
AA8
A
127 146Right-handed alpha
Helix 9
AA9
A
150 171Right-handed alpha
Helix 10
AB1
A
173 188Right-handed alpha
Helix 11
AB2
A
192 210Right-handed alpha
Helix 12
AB3
A
214 223Right-handed alpha
Helix 13
AB4
A
225 248Right-handed alpha
Helix 14
AB5
A
252 272Right-handed alpha
Helix 15
AB6
A
292 297Right-handed alpha
Helix 16
AB7
A
297 313Right-handed alpha
Helix 17
AB8
A
320 342Right-handed alpha
Helix 18
AB9
A
349 380Right-handed alpha
Helix 19
AC1
A
395 408Right-handed alpha
Helix 20
AC2
A
412 422Right-handed alpha
Helix 21
AC3
A
426 448Right-handed alpha
Helix 22
AC4
A
452 473Right-handed alpha
Helix 23
AC5
A
474 478Right-handed 310
Helix 24
AC6
A
479 495Right-handed alpha
Helix 25
AC7
A
506 525Right-handed alpha
Helix 26
AC8
A
542 558Right-handed alpha
Helix 27
AC9
A
562 575Right-handed alpha
Helix 28
AD1
A
576 578Right-handed 310
Helix 29
AD2
A
581 599Right-handed alpha
Helix 30
AD3
A
601 620Right-handed alpha
Helix 31
AD4
B
13 18Right-handed alpha
Helix 32
AD5
B
31 38Right-handed alpha
Helix 33
AD6
B
111 121Right-handed alpha
Helix 34
AD7
C
10 25Right-handed alpha
Helix 35
AD8
C
27 31Right-handed 310
Helix 36
AD9
C
33 57Right-handed alpha
Helix 37
AE1
C
61 80Right-handed alpha
Helix 38
AE2
C
82 101Right-handed alpha
Helix 39
AE3
C
102 104Right-handed 310
Helix 40
AE4
C
106 119Right-handed alpha
Helix 41
AE5
C
119 126Right-handed alpha
Helix 42
AE6
C
127 146Right-handed alpha
Helix 43
AE7
C
150 172Right-handed alpha
Helix 44
AE8
C
173 187Right-handed alpha
Helix 45
AE9
C
192 209Right-handed alpha
Helix 46
AF1
C
214 223Right-handed alpha
Helix 47
AF2
C
225 249Right-handed alpha
Helix 48
AF3
C
252 273Right-handed alpha
Helix 49
AF4
C
292 297Right-handed alpha
Helix 50
AF5
C
297 313Right-handed alpha
Helix 51
AF6
C
320 342Right-handed alpha
Helix 52
AF7
C
349 380Right-handed alpha
Helix 53
AF8
C
395 408Right-handed alpha
Helix 54
AF9
C
412 422Right-handed alpha
Helix 55
AG1
C
426 448Right-handed alpha
Helix 56
AG2
C
452 473Right-handed alpha
Helix 57
AG3
C
474 478Right-handed 310
Helix 58
AG4
C
479 495Right-handed alpha
Helix 59
AG5
C
506 525Right-handed alpha
Helix 60
AG6
C
542 558Right-handed alpha
Helix 61
AG7
C
562 575Right-handed alpha
Helix 62
AG8
C
581 599Right-handed alpha
Helix 63
AG9
C
601 620Right-handed alpha
Helix 64
AH1
D
13 18Right-handed alpha
Helix 65
AH2
D
111 121Right-handed alpha
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There are 6 sheets in PDB entry 5W94. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 9first strand
Strand 2
B
59 60anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 283first strand
Strand 2
A
286 291anti-parallel
Strand 3
B
41 43anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 87first strand
Strand 2
B
129 130parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
8 9first strand
Strand 2
D
59 60anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 283first strand
Strand 2
C
286 291anti-parallel
Strand 3
D
41 43anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 87first strand
Strand 2
D
128 130parallel
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