Analysis of interatomic Contacts of Structural Units in PDB entry:
5W98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5W98 entry

There is 1 chain in PDB entry 5W98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 5W98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
55 70Right-handed alpha
Helix 4
AA4
A
77 93Right-handed alpha
Helix 5
AA5
A
115 120Right-handed alpha
Helix 6
AA6
A
121 148Right-handed alpha
Helix 7
AA7
A
151 168Right-handed alpha
Helix 8
AA8
A
171 176Right-handed alpha
Helix 9
AA9
A
176 188Right-handed alpha
Helix 10
AB1
A
190 204Right-handed alpha
Helix 11
AB2
A
204 218Right-handed alpha
Helix 12
AB3
A
219 243Right-handed alpha
Helix 13
AB4
A
279 299Right-handed alpha
Helix 14
AB5
A
302 322Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5W98.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
4 9anti-parallel
Strand 4
A
107 110anti-parallel
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