Analysis of interatomic Contacts of Structural Units in PDB entry:
5WA0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WA0 entry

There are 4 chains in PDB entry 5WA0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 35	ALA 399
B	LYS 35	ALA 399
C	LYS 35	ALA 399
D	LYS 35	VAL 269

There are 51 helices in PDB entry 5WA0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	42	Right-handed 310
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	71	75	Right-handed 310
Helix 4	AA4	A	85	90	Right-handed 310
Helix 5	AA5	A	91	94	Right-handed 310
Helix 6	AA6	A	110	117	Right-handed alpha
Helix 7	AA7	A	131	138	Right-handed alpha
Helix 8	AA8	A	165	172	Right-handed alpha
Helix 9	AA9	A	195	199	Right-handed 310
Helix 10	AB1	A	208	212	Right-handed 310
Helix 11	AB2	A	240	244	Right-handed 310
Helix 12	AB3	A	260	265	Right-handed alpha
Helix 13	AB4	B	38	42	Right-handed 310
Helix 14	AB5	B	45	47	Right-handed 310
Helix 15	AB6	B	61	64	Right-handed 310
Helix 16	AB7	B	71	75	Right-handed 310
Helix 17	AB8	B	85	90	Right-handed 310
Helix 18	AB9	B	91	94	Right-handed 310
Helix 19	AC1	B	110	117	Right-handed alpha
Helix 20	AC2	B	131	137	Right-handed alpha
Helix 21	AC3	B	165	172	Right-handed alpha
Helix 22	AC4	B	195	200	Right-handed alpha
Helix 23	AC5	B	208	210	Right-handed 310
Helix 24	AC6	B	225	229	Right-handed 310
Helix 25	AC7	B	240	244	Right-handed 310
Helix 26	AC8	B	260	265	Right-handed alpha
Helix 27	AC9	C	38	42	Right-handed 310
Helix 28	AD1	C	45	47	Right-handed 310
Helix 29	AD2	C	61	64	Right-handed 310
Helix 30	AD3	C	71	75	Right-handed 310
Helix 31	AD4	C	85	90	Right-handed 310
Helix 32	AD5	C	91	94	Right-handed 310
Helix 33	AD6	C	110	117	Right-handed alpha
Helix 34	AD7	C	131	137	Right-handed alpha
Helix 35	AD8	C	165	172	Right-handed alpha
Helix 36	AD9	C	195	200	Right-handed alpha
Helix 37	AE1	C	208	210	Right-handed 310
Helix 38	AE2	C	240	244	Right-handed 310
Helix 39	AE3	C	260	265	Right-handed alpha
Helix 40	AE4	D	38	42	Right-handed 310
Helix 41	AE5	D	45	47	Right-handed 310
Helix 42	AE6	D	61	64	Right-handed 310
Helix 43	AE7	D	71	75	Right-handed 310
Helix 44	AE8	D	85	90	Right-handed 310
Helix 45	AE9	D	110	117	Right-handed alpha
Helix 46	AF1	D	131	137	Right-handed alpha
Helix 47	AF2	D	165	172	Right-handed alpha
Helix 48	AF3	D	195	199	Right-handed 310
Helix 49	AF4	D	208	212	Right-handed 310
Helix 50	AF5	D	240	244	Right-handed 310
Helix 51	AF6	D	260	265	Right-handed alpha

There are 23 sheets in PDB entry 5WA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	56	59	anti-parallel
Strand 3	A	77	78	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	248	254	parallel
Strand 4	A	181	186	anti-parallel
Strand 5	A	202	206	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	126	first strand
Strand 2	A	155	164	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	222	223	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	126	first strand
Strand 2	A	155	164	anti-parallel
Strand 3	A	214	219	anti-parallel
Strand 4	A	233	235	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	294	first strand
Strand 2	A	302	311	anti-parallel
Strand 3	A	346	354	anti-parallel
Strand 4	A	334	336	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	394	398	parallel
Strand 3	A	357	367	anti-parallel
Strand 4	A	317	323	anti-parallel
Strand 5	A	331	332	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	56	59	anti-parallel
Strand 3	B	77	78	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	248	254	parallel
Strand 4	B	181	186	anti-parallel
Strand 5	B	202	206	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	126	first strand
Strand 2	B	155	164	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	222	223	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	126	first strand
Strand 2	B	155	164	anti-parallel
Strand 3	B	214	219	anti-parallel
Strand 4	B	233	235	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	289	294	first strand
Strand 2	B	302	311	anti-parallel
Strand 3	B	346	354	anti-parallel
Strand 4	B	334	336	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	394	398	parallel
Strand 3	B	357	367	anti-parallel
Strand 4	B	317	323	anti-parallel
Strand 5	B	331	332	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	56	59	anti-parallel
Strand 3	C	77	78	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	109	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	248	254	parallel
Strand 4	C	181	186	anti-parallel
Strand 5	C	202	206	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	126	first strand
Strand 2	C	155	164	anti-parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	222	223	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	126	first strand
Strand 2	C	155	164	anti-parallel
Strand 3	C	214	219	anti-parallel
Strand 4	C	233	235	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	289	294	first strand
Strand 2	C	302	311	anti-parallel
Strand 3	C	346	354	anti-parallel
Strand 4	C	334	336	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	394	398	parallel
Strand 3	C	357	367	anti-parallel
Strand 4	C	317	323	anti-parallel
Strand 5	C	331	332	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	53	first strand
Strand 2	D	56	59	anti-parallel
Strand 3	D	77	78	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	109	first strand
Strand 2	D	96	100	anti-parallel
Strand 3	D	248	254	parallel
Strand 4	D	181	186	anti-parallel
Strand 5	D	202	206	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	126	first strand
Strand 2	D	155	164	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	222	223	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	126	first strand
Strand 2	D	155	164	anti-parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	233	235	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	289	294	first strand
Strand 2	D	302	311	anti-parallel
Strand 3	D	346	354	anti-parallel
Strand 4	D	331	336	anti-parallel
Strand 5	D	317	323	anti-parallel
Strand 6	D	357	367	anti-parallel
Strand 7	D	394	398	anti-parallel
Strand 8	D	298	299	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WA0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WA0