Analysis of interatomic Contacts of Structural Units in PDB entry:
5WA4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WA4 entry

There are 12 chains in PDB entry 5WA4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	ALA 350
B	GLU 5	ALA 350
C	GLU 5	ALA 350
D	GLU 5	ALA 350
E	GLU 5	ALA 350
F	GLU 5	ALA 350
M	LEU 3	LEU 13
N	ASN 4	GLU 12
O	LEU 3	LEU 13
P	ASN 4	GLU 12
Q	ASN 4	PHE 11
R	LEU 3	LEU 13

There are 86 helices in PDB entry 5WA4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	26	Right-handed alpha
Helix 2	AA2	A	26	34	Right-handed alpha
Helix 3	AA3	A	60	67	Right-handed alpha
Helix 4	AA4	A	67	83	Right-handed alpha
Helix 5	AA5	A	90	93	Right-handed 310
Helix 6	AA6	A	94	105	Right-handed alpha
Helix 7	AA7	A	131	144	Right-handed alpha
Helix 8	AA8	A	144	157	Right-handed alpha
Helix 9	AA9	A	160	177	Right-handed alpha
Helix 10	AB1	A	180	198	Right-handed alpha
Helix 11	AB2	A	201	216	Right-handed alpha
Helix 12	AB3	A	216	232	Right-handed alpha
Helix 13	AB4	A	240	260	Right-handed alpha
Helix 14	AB5	A	309	325	Right-handed alpha
Helix 15	AB6	A	328	348	Right-handed alpha
Helix 16	AB7	B	18	25	Right-handed alpha
Helix 17	AB8	B	26	35	Right-handed alpha
Helix 18	AB9	B	60	67	Right-handed alpha
Helix 19	AC1	B	67	83	Right-handed alpha
Helix 20	AC2	B	90	93	Right-handed 310
Helix 21	AC3	B	94	106	Right-handed alpha
Helix 22	AC4	B	133	157	Right-handed alpha
Helix 23	AC5	B	160	176	Right-handed alpha
Helix 24	AC6	B	180	197	Right-handed alpha
Helix 25	AC7	B	201	216	Right-handed alpha
Helix 26	AC8	B	216	231	Right-handed alpha
Helix 27	AC9	B	241	263	Right-handed alpha
Helix 28	AD1	B	309	325	Right-handed alpha
Helix 29	AD2	B	328	348	Right-handed alpha
Helix 30	AD3	C	18	25	Right-handed alpha
Helix 31	AD4	C	26	34	Right-handed alpha
Helix 32	AD5	C	60	67	Right-handed alpha
Helix 33	AD6	C	67	83	Right-handed alpha
Helix 34	AD7	C	90	93	Right-handed 310
Helix 35	AD8	C	94	106	Right-handed alpha
Helix 36	AD9	C	131	157	Right-handed alpha
Helix 37	AE1	C	160	176	Right-handed alpha
Helix 38	AE2	C	180	198	Right-handed alpha
Helix 39	AE3	C	201	216	Right-handed alpha
Helix 40	AE4	C	216	233	Right-handed alpha
Helix 41	AE5	C	240	263	Right-handed alpha
Helix 42	AE6	C	309	325	Right-handed alpha
Helix 43	AE7	C	328	348	Right-handed alpha
Helix 44	AE8	D	18	26	Right-handed alpha
Helix 45	AE9	D	26	34	Right-handed alpha
Helix 46	AF1	D	60	67	Right-handed alpha
Helix 47	AF2	D	67	83	Right-handed alpha
Helix 48	AF3	D	90	93	Right-handed 310
Helix 49	AF4	D	94	106	Right-handed alpha
Helix 50	AF5	D	131	157	Right-handed alpha
Helix 51	AF6	D	160	177	Right-handed alpha
Helix 52	AF7	D	180	197	Right-handed alpha
Helix 53	AF8	D	198	200	Right-handed 310
Helix 54	AF9	D	201	216	Right-handed alpha
Helix 55	AG1	D	216	232	Right-handed alpha
Helix 56	AG2	D	240	263	Right-handed alpha
Helix 57	AG3	D	309	325	Right-handed alpha
Helix 58	AG4	D	328	348	Right-handed alpha
Helix 59	AG5	E	18	26	Right-handed alpha
Helix 60	AG6	E	26	33	Right-handed alpha
Helix 61	AG7	E	60	83	Right-handed alpha
Helix 62	AG8	E	90	93	Right-handed 310
Helix 63	AG9	E	94	105	Right-handed alpha
Helix 64	AH1	E	131	157	Right-handed alpha
Helix 65	AH2	E	160	176	Right-handed alpha
Helix 66	AH3	E	180	199	Right-handed alpha
Helix 67	AH4	E	201	216	Right-handed alpha
Helix 68	AH5	E	216	233	Right-handed alpha
Helix 69	AH6	E	240	263	Right-handed alpha
Helix 70	AH7	E	306	326	Right-handed alpha
Helix 71	AH8	E	328	350	Right-handed alpha
Helix 72	AH9	F	18	25	Right-handed alpha
Helix 73	AI1	F	26	34	Right-handed alpha
Helix 74	AI2	F	60	67	Right-handed alpha
Helix 75	AI3	F	67	83	Right-handed alpha
Helix 76	AI4	F	90	93	Right-handed 310
Helix 77	AI5	F	94	106	Right-handed alpha
Helix 78	AI6	F	131	144	Right-handed alpha
Helix 79	AI7	F	144	158	Right-handed alpha
Helix 80	AI8	F	160	177	Right-handed alpha
Helix 81	AI9	F	180	199	Right-handed alpha
Helix 82	AJ1	F	201	216	Right-handed alpha
Helix 83	AJ2	F	216	233	Right-handed alpha
Helix 84	AJ3	F	240	263	Right-handed alpha
Helix 85	AJ4	F	306	326	Right-handed alpha
Helix 86	AJ5	F	328	347	Right-handed alpha

There are 7 sheets in PDB entry 5WA4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	46	first strand
Strand 2	A	52	59	anti-parallel
Strand 3	A	6	13	anti-parallel
Strand 4	A	119	125	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	46	first strand
Strand 2	B	52	59	anti-parallel
Strand 3	B	6	13	anti-parallel
Strand 4	B	122	125	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	46	first strand
Strand 2	C	52	59	anti-parallel
Strand 3	C	6	13	anti-parallel
Strand 4	C	119	125	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	46	first strand
Strand 2	D	52	59	anti-parallel
Strand 3	D	6	13	anti-parallel
Strand 4	D	120	125	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	46	first strand
Strand 2	E	52	59	anti-parallel
Strand 3	E	6	13	anti-parallel
Strand 4	E	120	125	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	52	59	anti-parallel
Strand 3	F	12	13	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	9	first strand
Strand 2	F	52	59	anti-parallel
Strand 3	F	41	46	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WA4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WA4