Analysis of interatomic Contacts of Structural Units in PDB entry:
5WAB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WAB entry

There are 2 chains in PDB entry 5WAB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	ALA 692
B	THR 5	GLY 665

There are111 helices in PDB entry 5WAB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	13	20	Right-handed alpha
Helix 3	AA3	A	32	36	Right-handed 310
Helix 4	AA4	A	73	78	Right-handed alpha
Helix 5	AA5	A	82	100	Right-handed alpha
Helix 6	AA6	A	120	124	Right-handed 310
Helix 7	AA7	A	128	145	Right-handed alpha
Helix 8	AA8	A	172	179	Right-handed alpha
Helix 9	AA9	A	181	191	Right-handed alpha
Helix 10	AB1	A	211	216	Right-handed alpha
Helix 11	AB2	A	238	246	Right-handed alpha
Helix 12	AB3	A	256	266	Right-handed alpha
Helix 13	AB4	A	270	293	Right-handed alpha
Helix 14	AB5	A	300	314	Right-handed alpha
Helix 15	AB6	A	323	325	Right-handed 310
Helix 16	AB7	A	339	342	Right-handed 310
Helix 17	AB8	A	361	369	Right-handed alpha
Helix 18	AB9	A	387	400	Right-handed alpha
Helix 19	AC1	A	411	416	Right-handed 310
Helix 20	AC2	A	427	439	Right-handed alpha
Helix 21	AC3	A	459	463	Right-handed 310
Helix 22	AC4	A	475	485	Right-handed alpha
Helix 23	AC5	A	501	505	Right-handed 310
Helix 24	AC6	A	507	511	Right-handed 310
Helix 25	AC7	A	527	532	Right-handed alpha
Helix 26	AC8	A	623	627	Right-handed 310
Helix 27	AC9	A	677	683	Right-handed alpha
Helix 28	AD1	A	684	692	Right-handed alpha
Helix 29	AD2	B	8	12	Right-handed 310
Helix 30	AD3	B	13	20	Right-handed alpha
Helix 31	AD4	B	32	36	Right-handed 310
Helix 32	AD5	B	73	78	Right-handed alpha
Helix 33	AD6	B	82	101	Right-handed alpha
Helix 34	AD7	B	120	124	Right-handed 310
Helix 35	AD8	B	128	145	Right-handed alpha
Helix 36	AD9	B	172	179	Right-handed alpha
Helix 37	AE1	B	181	191	Right-handed alpha
Helix 38	AE2	B	211	216	Right-handed alpha
Helix 39	AE3	B	238	246	Right-handed alpha
Helix 40	AE4	B	257	266	Right-handed alpha
Helix 41	AE5	B	270	293	Right-handed alpha
Helix 42	AE6	B	300	314	Right-handed alpha
Helix 43	AE7	B	323	325	Right-handed 310
Helix 44	AE8	B	339	342	Right-handed 310
Helix 45	AE9	B	361	369	Right-handed alpha
Helix 46	AF1	B	387	400	Right-handed alpha
Helix 47	AF2	B	411	416	Right-handed 310
Helix 48	AF3	B	427	441	Right-handed alpha
Helix 49	AF4	B	459	463	Right-handed 310
Helix 50	AF5	B	472	474	Right-handed 310
Helix 51	AF6	B	475	485	Right-handed alpha
Helix 52	AF7	B	501	505	Right-handed 310
Helix 53	AF8	B	507	511	Right-handed 310
Helix 54	AF9	B	527	532	Right-handed alpha
Helix 55	AG1	B	623	627	Right-handed 310
Helix 56	AG2	C	8	12	Right-handed 310
Helix 57	AG3	C	13	21	Right-handed alpha
Helix 58	AG4	C	32	36	Right-handed 310
Helix 59	AG5	C	73	78	Right-handed alpha
Helix 60	AG6	C	82	100	Right-handed alpha
Helix 61	AG7	C	120	124	Right-handed 310
Helix 62	AG8	C	128	145	Right-handed alpha
Helix 63	AG9	C	172	179	Right-handed alpha
Helix 64	AH1	C	181	191	Right-handed alpha
Helix 65	AH2	C	211	216	Right-handed alpha
Helix 66	AH3	C	238	246	Right-handed alpha
Helix 67	AH4	C	257	266	Right-handed alpha
Helix 68	AH5	C	270	293	Right-handed alpha
Helix 69	AH6	C	300	314	Right-handed alpha
Helix 70	AH7	C	323	325	Right-handed 310
Helix 71	AH8	C	339	342	Right-handed 310
Helix 72	AH9	C	361	369	Right-handed alpha
Helix 73	AI1	C	387	400	Right-handed alpha
Helix 74	AI2	C	411	416	Right-handed 310
Helix 75	AI3	C	427	439	Right-handed alpha
Helix 76	AI4	C	456	461	Right-handed alpha
Helix 77	AI5	C	475	485	Right-handed alpha
Helix 78	AI6	C	501	505	Right-handed 310
Helix 79	AI7	C	507	511	Right-handed 310
Helix 80	AI8	C	527	532	Right-handed alpha
Helix 81	AI9	C	623	628	Right-handed 310
Helix 82	AJ1	D	8	12	Right-handed 310
Helix 83	AJ2	D	13	20	Right-handed alpha
Helix 84	AJ3	D	32	36	Right-handed 310
Helix 85	AJ4	D	73	78	Right-handed alpha
Helix 86	AJ5	D	82	100	Right-handed alpha
Helix 87	AJ6	D	120	124	Right-handed 310
Helix 88	AJ7	D	128	145	Right-handed alpha
Helix 89	AJ8	D	172	179	Right-handed alpha
Helix 90	AJ9	D	181	191	Right-handed alpha
Helix 91	AK1	D	211	216	Right-handed alpha
Helix 92	AK2	D	238	246	Right-handed alpha
Helix 93	AK3	D	256	266	Right-handed alpha
Helix 94	AK4	D	270	293	Right-handed alpha
Helix 95	AK5	D	300	314	Right-handed alpha
Helix 96	AK6	D	323	325	Right-handed 310
Helix 97	AK7	D	339	342	Right-handed 310
Helix 98	AK8	D	361	369	Right-handed alpha
Helix 99	AK9	D	387	400	Right-handed alpha
Helix 100	AL1	D	411	416	Right-handed 310
Helix 101	AL2	D	427	439	Right-handed alpha
Helix 102	AL3	D	456	461	Right-handed alpha
Helix 103	AL4	D	472	474	Right-handed 310
Helix 104	AL5	D	475	485	Right-handed alpha
Helix 105	AL6	D	501	505	Right-handed 310
Helix 106	AL7	D	507	511	Right-handed 310
Helix 107	AL8	D	527	532	Right-handed alpha
Helix 108	AL9	D	623	627	Right-handed 310
Helix 109	AM1	D	677	684	Right-handed alpha
Helix 110	AM2	D	684	700	Right-handed alpha
Helix 111	AM3	D	711	722	Right-handed alpha

There are 31 sheets in PDB entry 5WAB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	102	106	parallel
Strand 3	A	149	155	parallel
Strand 4	A	195	198	parallel
Strand 5	A	228	230	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	202	203	anti-parallel
Strand 3	A	168	170	parallel
Strand 4	A	517	519	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	321	first strand
Strand 2	A	465	468	anti-parallel
Strand 3	A	444	449	parallel
Strand 4	A	403	409	parallel
Strand 5	A	334	337	parallel
Strand 6	A	373	376	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	499	first strand
Strand 2	A	538	540	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	560	first strand
Strand 2	A	566	574	anti-parallel
Strand 3	A	615	622	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	601	610	first strand
Strand 2	A	580	590	anti-parallel
Strand 3	A	642	651	anti-parallel
Strand 4	A	654	663	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	A	636	638	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	102	106	parallel
Strand 3	B	149	150	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	155	first strand
Strand 2	B	195	198	parallel
Strand 3	B	228	230	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	202	203	anti-parallel
Strand 3	B	168	170	parallel
Strand 4	B	517	519	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	321	first strand
Strand 2	B	465	468	anti-parallel
Strand 3	B	444	449	parallel
Strand 4	B	403	409	parallel
Strand 5	B	334	337	parallel
Strand 6	B	373	376	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	499	first strand
Strand 2	B	538	540	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	560	first strand
Strand 2	B	566	574	anti-parallel
Strand 3	B	615	622	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	610	first strand
Strand 2	B	580	590	anti-parallel
Strand 3	B	642	651	anti-parallel
Strand 4	B	654	663	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	631	first strand
Strand 2	B	636	638	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	102	106	parallel
Strand 3	C	149	150	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	155	first strand
Strand 2	C	195	198	parallel
Strand 3	C	228	230	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	202	203	anti-parallel
Strand 3	C	168	170	parallel
Strand 4	C	517	519	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	321	first strand
Strand 2	C	465	468	anti-parallel
Strand 3	C	444	449	parallel
Strand 4	C	403	409	parallel
Strand 5	C	334	337	parallel
Strand 6	C	373	376	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	538	540	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	551	562	first strand
Strand 2	C	565	574	anti-parallel
Strand 3	C	615	622	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	601	610	first strand
Strand 2	C	580	590	anti-parallel
Strand 3	C	642	651	anti-parallel
Strand 4	C	654	663	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	629	631	first strand
Strand 2	C	636	638	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	102	105	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	155	first strand
Strand 2	D	195	198	parallel
Strand 3	D	228	230	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	206	207	first strand
Strand 2	D	202	203	anti-parallel
Strand 3	D	168	170	parallel
Strand 4	D	517	519	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	321	first strand
Strand 2	D	465	468	anti-parallel
Strand 3	D	444	449	parallel
Strand 4	D	403	409	parallel
Strand 5	D	334	337	parallel
Strand 6	D	373	376	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	498	499	first strand
Strand 2	D	538	540	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	551	562	first strand
Strand 2	D	565	574	anti-parallel
Strand 3	D	615	622	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	601	610	first strand
Strand 2	D	580	590	anti-parallel
Strand 3	D	642	651	anti-parallel
Strand 4	D	654	663	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	629	631	first strand
Strand 2	D	636	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WAB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WAB