Analysis of interatomic Contacts of Structural Units in PDB entry:
5WAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WAK entry

There are 2 chains in PDB entry 5WAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8GLU 412
B
 HIS 83PRO 533
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5WAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 28Right-handed alpha
Helix 2
AA2
A
348 350Right-handed 310
Helix 3
AA3
A
355 362Right-handed alpha
Helix 4
AA4
A
406 409Right-handed 310
Helix 5
AA5
B
85 89Right-handed 310
Helix 6
AA6
B
91 107Right-handed alpha
Helix 7
AA7
B
111 122Right-handed 310
Helix 8
AA8
B
126 130Right-handed 310
Helix 9
AA9
B
133 135Right-handed 310
Helix 10
AB1
B
136 147Right-handed alpha
Helix 11
AB2
B
459 471Right-handed alpha
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There are 9 sheets in PDB entry 5WAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 382first strand
Strand 2
A
389 394anti-parallel
Strand 3
A
398 404anti-parallel
Strand 4
A
32 39anti-parallel
Strand 5
B
526 531anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 54first strand
Strand 2
A
61 69anti-parallel
Strand 3
A
77 87anti-parallel
Strand 4
A
115 123anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
171 174anti-parallel
Strand 5
A
216 218parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
221 223anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 235first strand
Strand 2
A
242 247anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
267 269anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
288 293anti-parallel
Strand 3
A
297 302anti-parallel
Strand 4
A
311 314anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 325first strand
Strand 2
A
332 337anti-parallel
Strand 3
A
342 346anti-parallel
Strand 4
A
366 370anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
191 193anti-parallel
Strand 3
B
246 247anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
439 443first strand
Strand 2
B
429 433anti-parallel
Strand 3
B
486 491parallel
Strand 4
B
474 479anti-parallel
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