Analysis of interatomic Contacts of Structural Units in PDB entry:
5WB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WB1 entry

There is 1 chain in PDB entry 5WB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 22VAL 1122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5WB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 60Right-handed alpha
Helix 2
AA2
A
66 84Right-handed alpha
Helix 3
AA3
A
85 95Right-handed alpha
Helix 4
AA4
A
100 134Right-handed alpha
Helix 5
AA5
A
140 158Right-handed alpha
Helix 6
AA6
A
159 164Right-handed alpha
Helix 7
AA7
A
183 197Right-handed alpha
Helix 8
AA8
A
197 216Right-handed alpha
Helix 9
AA9
A
222 256Right-handed alpha
Helix 10
AB1
A
262 282Right-handed alpha
Helix 11
AB2
A
282 291Right-handed alpha
Helix 12
AB3
A
295 311Right-handed alpha
Helix 13
AB4
A
1086 1090Right-handed 310
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There are 3 sheets in PDB entry 5WB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1004 1007first strand
Strand 2
A
1017 1024anti-parallel
Strand 3
A
1077 1083anti-parallel
Strand 4
A
1067 1072anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1011first strand
Strand 2
A
1112 1115parallel
Strand 3
A
1091 1099anti-parallel
Strand 4
A
1031 1039anti-parallel
Strand 5
A
1046 1052anti-parallel
Strand 6
A
1057 1059anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1010 1011first strand
Strand 2
A
1112 1115parallel
Strand 3
A
1091 1099anti-parallel
Strand 4
A
1107 1108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il