Analysis of interatomic Contacts of Structural Units in PDB entry:
5WB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WB7 entry

There are 3 chains in PDB entry 5WB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	SER 501
B	GLU 2	HIS 505
C	GLU 2	ARG 300

There are 64 helices in PDB entry 5WB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	170	174	Right-handed 310
Helix 5	AA5	A	179	183	Right-handed 310
Helix 6	AA6	A	203	207	Right-handed 310
Helix 7	AA7	A	318	322	Right-handed 310
Helix 8	AA8	A	331	336	Right-handed 310
Helix 9	AA9	A	348	354	Right-handed alpha
Helix 10	AB1	A	364	374	Right-handed 310
Helix 11	AB2	A	393	397	Right-handed 310
Helix 12	AB3	A	407	410	Right-handed 310
Helix 13	AB4	A	452	457	Right-handed 310
Helix 14	AB5	A	471	478	Right-handed alpha
Helix 15	AB6	B	19	32	Right-handed alpha
Helix 16	AB7	B	52	58	Right-handed 310
Helix 17	AB8	B	134	138	Right-handed 310
Helix 18	AB9	B	148	152	Right-handed 310
Helix 19	AC1	B	170	174	Right-handed 310
Helix 20	AC2	B	179	183	Right-handed 310
Helix 21	AC3	B	203	207	Right-handed 310
Helix 22	AC4	B	220	224	Right-handed 310
Helix 23	AC5	B	318	322	Right-handed 310
Helix 24	AC6	B	331	336	Right-handed 310
Helix 25	AC7	B	348	354	Right-handed alpha
Helix 26	AC8	B	364	374	Right-handed 310
Helix 27	AC9	B	393	397	Right-handed 310
Helix 28	AD1	B	407	410	Right-handed 310
Helix 29	AD2	B	452	457	Right-handed 310
Helix 30	AD3	B	471	479	Right-handed alpha
Helix 31	AD4	C	19	32	Right-handed alpha
Helix 32	AD5	C	52	58	Right-handed 310
Helix 33	AD6	C	88	91	Right-handed 310
Helix 34	AD7	C	170	174	Right-handed 310
Helix 35	AD8	C	203	207	Right-handed 310
Helix 36	AD9	C	220	224	Right-handed 310
Helix 37	AE1	C	318	322	Right-handed 310
Helix 38	AE2	C	331	336	Right-handed 310
Helix 39	AE3	C	348	354	Right-handed alpha
Helix 40	AE4	C	355	359	Right-handed 310
Helix 41	AE5	C	364	374	Right-handed 310
Helix 42	AE6	C	393	397	Right-handed 310
Helix 43	AE7	C	407	410	Right-handed 310
Helix 44	AE8	C	447	451	Right-handed 310
Helix 45	AE9	C	452	456	Right-handed 310
Helix 46	AF1	C	471	478	Right-handed alpha
Helix 47	AF2	D	19	31	Right-handed alpha
Helix 48	AF3	D	52	58	Right-handed 310
Helix 49	AF4	D	145	149	Right-handed 310
Helix 50	AF5	D	170	174	Right-handed 310
Helix 51	AF6	D	179	183	Right-handed 310
Helix 52	AF7	D	203	207	Right-handed 310
Helix 53	AF8	D	220	224	Right-handed 310
Helix 54	AF9	D	318	322	Right-handed 310
Helix 55	AG1	D	331	336	Right-handed 310
Helix 56	AG2	D	348	354	Right-handed alpha
Helix 57	AG3	D	355	359	Right-handed 310
Helix 58	AG4	D	364	374	Right-handed 310
Helix 59	AG5	D	393	397	Right-handed 310
Helix 60	AG6	D	407	410	Right-handed 310
Helix 61	AG7	D	452	456	Right-handed 310
Helix 62	AG8	D	471	479	Right-handed alpha
Helix 63	AG9	D	495	499	Right-handed 310
Helix 64	AH1	E	7	11	Right-handed 310

There are 41 sheets in PDB entry 5WB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	36	37	parallel
Strand 3	A	60	61	parallel
Strand 4	A	82	83	parallel
Strand 5	A	118	119	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	E	27	32	parallel
Strand 3	E	17	22	anti-parallel
Strand 4	E	3	5	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	65	68	parallel
Strand 3	A	93	98	parallel
Strand 4	A	123	127	parallel
Strand 5	A	153	154	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	232	first strand
Strand 2	A	235	237	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	253	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	266	268	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	277	first strand
Strand 2	A	283	284	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	295	first strand
Strand 2	A	300	304	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	340	342	parallel
Strand 3	A	376	377	parallel
Strand 4	A	401	402	parallel
Strand 5	A	431	432	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	417	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	467	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	36	37	parallel
Strand 3	B	60	61	parallel
Strand 4	B	82	83	parallel
Strand 5	B	118	119	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	F	27	32	parallel
Strand 3	F	17	22	anti-parallel
Strand 4	F	3	5	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	65	68	parallel
Strand 3	B	93	98	parallel
Strand 4	B	123	127	parallel
Strand 5	B	153	154	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	230	232	anti-parallel
Strand 3	B	266	268	parallel
Strand 4	B	261	263	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	283	284	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	295	first strand
Strand 2	B	300	304	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	340	342	parallel
Strand 3	B	376	377	parallel
Strand 4	B	401	402	parallel
Strand 5	B	431	432	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	381	383	parallel
Strand 3	B	412	417	parallel
Strand 4	B	436	440	parallel
Strand 5	B	464	467	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	7	first strand
Strand 2	C	36	37	parallel
Strand 3	C	60	61	parallel
Strand 4	C	82	83	parallel
Strand 5	C	118	119	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	65	68	parallel
Strand 3	C	93	98	parallel
Strand 4	C	123	127	parallel
Strand 5	C	153	154	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	232	first strand
Strand 2	C	235	237	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	253	255	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	263	first strand
Strand 2	C	266	268	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	299	300	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	340	342	parallel
Strand 3	C	376	377	parallel
Strand 4	C	401	402	parallel
Strand 5	C	431	432	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	347	first strand
Strand 2	C	381	383	parallel
Strand 3	C	412	417	parallel
Strand 4	C	436	440	parallel
Strand 5	C	464	467	parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	36	37	parallel
Strand 3	D	60	61	parallel
Strand 4	D	82	83	parallel
Strand 5	D	118	119	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	65	68	parallel
Strand 3	D	93	98	parallel
Strand 4	D	123	127	parallel
Strand 5	D	153	154	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	237	first strand
Strand 2	D	230	232	anti-parallel
Strand 3	D	266	268	parallel
Strand 4	D	261	263	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	246	first strand
Strand 2	D	253	255	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	277	first strand
Strand 2	D	283	284	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	295	296	first strand
Strand 2	D	299	300	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	314	first strand
Strand 2	D	340	342	parallel
Strand 3	D	376	377	parallel
Strand 4	D	401	402	parallel
Strand 5	D	431	432	parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	381	383	parallel
Strand 3	D	412	417	parallel
Strand 4	D	436	440	parallel
Strand 5	D	464	467	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	37	first strand
Strand 2	E	43	44	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	37	first strand
Strand 2	F	43	44	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	17	22	anti-parallel
Strand 3	G	27	32	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	37	first strand
Strand 2	G	43	44	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	17	22	anti-parallel
Strand 3	H	27	32	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	37	first strand
Strand 2	H	43	44	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WB7