Analysis of interatomic Contacts of Structural Units in PDB entry:
5WB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WB8 entry

There are 4 chains in PDB entry 5WB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	HIS 504
B	CYS 38	THR 79
C	SER 44	THR 79
D	LEU 1	HIS 506

There are 29 helices in PDB entry 5WB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	52	58	Right-handed 310
Helix 3	AA3	A	145	149	Right-handed 310
Helix 4	AA4	A	170	174	Right-handed 310
Helix 5	AA5	A	203	207	Right-handed 310
Helix 6	AA6	A	318	322	Right-handed 310
Helix 7	AA7	A	331	336	Right-handed 310
Helix 8	AA8	A	348	354	Right-handed alpha
Helix 9	AA9	A	364	374	Right-handed 310
Helix 10	AB1	A	393	397	Right-handed 310
Helix 11	AB2	A	407	410	Right-handed 310
Helix 12	AB3	A	446	451	Right-handed 310
Helix 13	AB4	A	452	456	Right-handed 310
Helix 14	AB5	A	471	477	Right-handed alpha
Helix 15	AB6	A	495	499	Right-handed 310
Helix 16	AB7	D	19	32	Right-handed alpha
Helix 17	AB8	D	52	58	Right-handed 310
Helix 18	AB9	D	170	174	Right-handed 310
Helix 19	AC1	D	179	183	Right-handed 310
Helix 20	AC2	D	203	207	Right-handed 310
Helix 21	AC3	D	318	322	Right-handed 310
Helix 22	AC4	D	348	354	Right-handed alpha
Helix 23	AC5	D	364	374	Right-handed 310
Helix 24	AC6	D	393	397	Right-handed 310
Helix 25	AC7	D	407	410	Right-handed 310
Helix 26	AC8	D	447	451	Right-handed 310
Helix 27	AC9	D	452	456	Right-handed 310
Helix 28	AD1	D	471	477	Right-handed alpha
Helix 29	AD2	D	495	499	Right-handed 310

There are 21 sheets in PDB entry 5WB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	36	37	parallel
Strand 3	A	60	61	parallel
Strand 4	A	82	83	parallel
Strand 5	A	118	119	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	65	68	parallel
Strand 3	A	93	97	parallel
Strand 4	A	123	126	parallel
Strand 5	A	153	154	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	224	227	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	236	237	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	252	255	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	266	268	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	296	first strand
Strand 2	A	299	304	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	340	342	parallel
Strand 3	A	376	377	parallel
Strand 4	A	401	402	parallel
Strand 5	A	431	432	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	417	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	467	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	75	76	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	54	first strand
Strand 2	C	59	64	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	69	first strand
Strand 2	C	75	76	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	36	37	parallel
Strand 3	D	60	61	parallel
Strand 4	D	82	83	parallel
Strand 5	D	118	119	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	65	68	parallel
Strand 3	D	93	98	parallel
Strand 4	D	123	127	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	236	237	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	252	255	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	261	263	anti-parallel
Strand 3	D	282	284	parallel
Strand 4	D	276	277	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	295	first strand
Strand 2	D	300	304	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	D	376	377	parallel
Strand 3	D	401	402	parallel
Strand 4	D	431	432	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	347	first strand
Strand 2	D	381	383	parallel
Strand 3	D	412	417	parallel
Strand 4	D	436	440	parallel
Strand 5	D	464	466	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WB8