Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WBF entry

There are 3 chains in PDB entry 5WBF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 28	LYS 293
B	ILE 29	GLU 294
C	ILE 29	GLU 294

There are 27 helices in PDB entry 5WBF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	75	Right-handed alpha
Helix 2	AA2	A	82	97	Right-handed alpha
Helix 3	AA3	A	132	141	Right-handed alpha
Helix 4	AA4	A	189	195	Right-handed alpha
Helix 5	AA5	A	206	208	Right-handed 310
Helix 6	AA6	A	215	219	Right-handed 310
Helix 7	AA7	A	222	227	Right-handed alpha
Helix 8	AA8	A	231	242	Right-handed alpha
Helix 9	AA9	A	288	292	Right-handed alpha
Helix 10	AB1	B	30	75	Right-handed alpha
Helix 11	AB2	B	82	97	Right-handed alpha
Helix 12	AB3	B	132	142	Right-handed alpha
Helix 13	AB4	B	189	195	Right-handed alpha
Helix 14	AB5	B	206	208	Right-handed 310
Helix 15	AB6	B	215	219	Right-handed 310
Helix 16	AB7	B	222	227	Right-handed alpha
Helix 17	AB8	B	231	242	Right-handed alpha
Helix 18	AB9	B	288	292	Right-handed alpha
Helix 19	AC1	C	30	75	Right-handed alpha
Helix 20	AC2	C	82	97	Right-handed alpha
Helix 21	AC3	C	132	141	Right-handed alpha
Helix 22	AC4	C	189	195	Right-handed alpha
Helix 23	AC5	C	206	208	Right-handed 310
Helix 24	AC6	C	215	219	Right-handed 310
Helix 25	AC7	C	222	227	Right-handed alpha
Helix 26	AC8	C	231	242	Right-handed alpha
Helix 27	AC9	C	288	292	Right-handed alpha

There are 9 sheets in PDB entry 5WBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	113	120	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	178	185	anti-parallel
Strand 5	A	158	169	anti-parallel
Strand 6	A	146	147	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	125	first strand
Strand 2	A	113	120	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	178	185	anti-parallel
Strand 5	A	158	169	anti-parallel
Strand 6	A	151	155	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	201	204	anti-parallel
Strand 3	A	279	287	anti-parallel
Strand 4	A	257	266	anti-parallel
Strand 5	A	245	250	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	113	120	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	178	185	anti-parallel
Strand 5	B	158	169	anti-parallel
Strand 6	B	146	147	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	113	120	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	178	185	anti-parallel
Strand 5	B	158	169	anti-parallel
Strand 6	B	151	155	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	210	212	first strand
Strand 2	B	201	204	anti-parallel
Strand 3	B	279	287	anti-parallel
Strand 4	B	257	266	anti-parallel
Strand 5	B	245	250	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	113	120	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	176	185	anti-parallel
Strand 5	C	158	170	anti-parallel
Strand 6	C	146	147	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	125	first strand
Strand 2	C	113	120	anti-parallel
Strand 3	C	100	107	anti-parallel
Strand 4	C	176	185	anti-parallel
Strand 5	C	158	170	anti-parallel
Strand 6	C	151	155	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	212	first strand
Strand 2	C	201	204	anti-parallel
Strand 3	C	279	287	anti-parallel
Strand 4	C	257	266	anti-parallel
Strand 5	C	245	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WBF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBF