Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WBJ entry

There are 2 chains in PDB entry 5WBJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 61	ASP 1339
T	GLU 111	ILE 118

There are 39 helices in PDB entry 5WBJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	66	Right-handed 310
Helix 2	AA2	A	75	79	Right-handed 310
Helix 3	AA3	A	138	142	Right-handed 310
Helix 4	AA4	A	143	161	Right-handed alpha
Helix 5	AA5	A	175	190	Right-handed alpha
Helix 6	AA6	A	228	235	Right-handed alpha
Helix 7	AA7	A	248	259	Right-handed alpha
Helix 8	AA8	A	294	302	Right-handed alpha
Helix 9	AA9	A	302	315	Right-handed alpha
Helix 10	AB1	A	322	326	Right-handed 310
Helix 11	AB2	A	338	359	Right-handed alpha
Helix 12	AB3	A	360	369	Right-handed alpha
Helix 13	AB4	A	371	391	Right-handed alpha
Helix 14	AB5	A	409	430	Right-handed alpha
Helix 15	AB6	A	439	454	Right-handed alpha
Helix 16	AB7	A	464	472	Right-handed alpha
Helix 17	AB8	A	477	490	Right-handed alpha
Helix 18	AB9	A	492	503	Right-handed alpha
Helix 19	AC1	A	504	511	Right-handed alpha
Helix 20	AC2	A	512	514	Right-handed 310
Helix 21	AC3	A	516	534	Right-handed alpha
Helix 22	AC4	A	537	544	Right-handed alpha
Helix 23	AC5	A	546	556	Right-handed alpha
Helix 24	AC6	A	560	576	Right-handed alpha
Helix 25	AC7	A	578	588	Right-handed alpha
Helix 26	AC8	A	589	598	Right-handed alpha
Helix 27	AC9	A	610	625	Right-handed alpha
Helix 28	AD1	A	627	637	Right-handed alpha
Helix 29	AD2	A	638	644	Right-handed alpha
Helix 30	AD3	A	645	649	Right-handed 310
Helix 31	AD4	A	651	665	Right-handed alpha
Helix 32	AD5	A	684	699	Right-handed alpha
Helix 33	AD6	A	705	723	Right-handed alpha
Helix 34	AD7	A	723	735	Right-handed alpha
Helix 35	AD8	A	832	844	Right-handed alpha
Helix 36	AD9	A	848	863	Right-handed alpha
Helix 37	AE1	A	957	961	Right-handed 310
Helix 38	AE2	A	965	972	Right-handed alpha
Helix 39	AE3	A	986	1009	Right-handed alpha

There are 10 sheets in PDB entry 5WBJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	106	113	parallel
Strand 3	A	194	200	parallel
Strand 4	A	239	243	parallel
Strand 5	A	273	277	parallel
Strand 6	A	396	397	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	223	227	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1015	1023	first strand
Strand 2	A	1332	1337	anti-parallel
Strand 3	A	1323	1327	anti-parallel
Strand 4	A	1314	1315	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1030	1035	first strand
Strand 2	A	1041	1046	anti-parallel
Strand 3	A	1051	1055	anti-parallel
Strand 4	A	1061	1064	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1075	1081	first strand
Strand 2	A	1088	1093	anti-parallel
Strand 3	A	1097	1101	anti-parallel
Strand 4	A	1112	1117	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1132	1136	first strand
Strand 2	A	1141	1145	anti-parallel
Strand 3	A	1150	1155	anti-parallel
Strand 4	A	1160	1166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1173	1178	first strand
Strand 2	A	1185	1190	anti-parallel
Strand 3	A	1195	1199	anti-parallel
Strand 4	A	1206	1210	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1219	1221	first strand
Strand 2	A	1236	1237	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1231	1232	first strand
Strand 2	A	1241	1246	anti-parallel
Strand 3	A	1255	1258	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1264	1269	first strand
Strand 2	A	1275	1280	anti-parallel
Strand 3	A	1284	1289	anti-parallel
Strand 4	A	1294	1299	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WBJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBJ