Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5WBS entry

There are 8 chains in PDB entry 5WBS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 14	GLY 217
B	HIS 16	GLY 215
C	GLY 17	GLY 215
D	CYS 19	GLY 215
E	PHE 18	GLY 215
F	ASP 15	GLY 215
G	ASP 15	SER 216
H	PHE 18	TYR 214

There are 55 helices in PDB entry 5WBS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	56	62	Right-handed alpha
Helix 4	AA4	A	67	77	Right-handed alpha
Helix 5	AA5	A	90	108	Right-handed alpha
Helix 6	AA6	A	117	121	Right-handed 310
Helix 7	AA7	A	203	215	Right-handed alpha
Helix 8	AA8	B	24	28	Right-handed 310
Helix 9	AA9	B	45	54	Right-handed alpha
Helix 10	AB1	B	56	62	Right-handed alpha
Helix 11	AB2	B	67	77	Right-handed alpha
Helix 12	AB3	B	90	108	Right-handed alpha
Helix 13	AB4	B	117	121	Right-handed 310
Helix 14	AB5	B	204	214	Right-handed alpha
Helix 15	AB6	C	24	28	Right-handed 310
Helix 16	AB7	C	45	54	Right-handed alpha
Helix 17	AB8	C	56	62	Right-handed alpha
Helix 18	AB9	C	67	77	Right-handed alpha
Helix 19	AC1	C	90	108	Right-handed alpha
Helix 20	AC2	C	117	121	Right-handed 310
Helix 21	AC3	C	203	214	Right-handed alpha
Helix 22	AC4	D	24	28	Right-handed 310
Helix 23	AC5	D	45	54	Right-handed alpha
Helix 24	AC6	D	56	63	Right-handed alpha
Helix 25	AC7	D	67	77	Right-handed alpha
Helix 26	AC8	D	90	108	Right-handed alpha
Helix 27	AC9	D	113	121	Right-handed 310
Helix 28	AD1	D	204	215	Right-handed alpha
Helix 29	AD2	E	24	28	Right-handed 310
Helix 30	AD3	E	45	55	Right-handed alpha
Helix 31	AD4	E	56	62	Right-handed alpha
Helix 32	AD5	E	67	77	Right-handed alpha
Helix 33	AD6	E	90	108	Right-handed alpha
Helix 34	AD7	E	117	121	Right-handed 310
Helix 35	AD8	E	204	215	Right-handed alpha
Helix 36	AD9	F	45	55	Right-handed alpha
Helix 37	AE1	F	56	62	Right-handed alpha
Helix 38	AE2	F	67	77	Right-handed alpha
Helix 39	AE3	F	90	108	Right-handed alpha
Helix 40	AE4	F	113	121	Right-handed 310
Helix 41	AE5	F	204	214	Right-handed alpha
Helix 42	AE6	G	24	28	Right-handed 310
Helix 43	AE7	G	45	53	Right-handed alpha
Helix 44	AE8	G	56	62	Right-handed alpha
Helix 45	AE9	G	67	77	Right-handed alpha
Helix 46	AF1	G	90	108	Right-handed alpha
Helix 47	AF2	G	113	121	Right-handed 310
Helix 48	AF3	G	204	215	Right-handed alpha
Helix 49	AF4	H	24	28	Right-handed 310
Helix 50	AF5	H	45	54	Right-handed alpha
Helix 51	AF6	H	56	62	Right-handed alpha
Helix 52	AF7	H	67	77	Right-handed alpha
Helix 53	AF8	H	90	108	Right-handed alpha
Helix 54	AF9	H	113	121	Right-handed 310
Helix 55	AG1	H	204	214	Right-handed alpha

There are 8 sheets in PDB entry 5WBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	A	34	37	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	21	first strand
Strand 2	B	34	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	21	first strand
Strand 2	C	34	37	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	21	first strand
Strand 2	D	34	35	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	21	first strand
Strand 2	E	34	36	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	21	first strand
Strand 2	F	34	37	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	21	first strand
Strand 2	G	34	37	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	21	first strand
Strand 2	H	34	36	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5WBS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBS