Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WBW entry

There are 3 chains in PDB entry 5WBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6PRO 343
B
 GLN 6GLU 356
D
 GLN 4GLU 356
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5WBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
31 40Right-handed alpha
Helix 3
AA3
A
49 58Right-handed alpha
Helix 4
AA4
A
61 74Right-handed alpha
Helix 5
AA5
A
89 106Right-handed alpha
Helix 6
AA6
A
112 121Right-handed alpha
Helix 7
AA7
A
123 133Right-handed alpha
Helix 8
AA8
A
136 149Right-handed alpha
Helix 9
AA9
A
164 170Right-handed alpha
Helix 10
AB1
A
174 180Right-handed alpha
Helix 11
AB2
A
189 201Right-handed alpha
Helix 12
AB3
A
217 231Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
Helix 14
AB5
A
247 253Right-handed alpha
Helix 15
AB6
A
259 274Right-handed alpha
Helix 16
AB7
A
286 291Right-handed alpha
Helix 17
AB8
A
297 307Right-handed alpha
Helix 18
AB9
A
317 328Right-handed alpha
Helix 19
AC1
A
329 334Right-handed alpha
Helix 20
AC2
B
8 25Right-handed alpha
Helix 21
AC3
B
31 40Right-handed alpha
Helix 22
AC4
B
49 58Right-handed alpha
Helix 23
AC5
B
61 74Right-handed alpha
Helix 24
AC6
B
89 104Right-handed alpha
Helix 25
AC7
B
112 123Right-handed alpha
Helix 26
AC8
B
123 131Right-handed alpha
Helix 27
AC9
B
136 149Right-handed alpha
Helix 28
AD1
B
164 170Right-handed alpha
Helix 29
AD2
B
174 180Right-handed alpha
Helix 30
AD3
B
189 201Right-handed alpha
Helix 31
AD4
B
218 231Right-handed alpha
Helix 32
AD5
B
247 253Right-handed alpha
Helix 33
AD6
B
259 274Right-handed alpha
Helix 34
AD7
B
285 290Right-handed 310
Helix 35
AD8
B
296 308Right-handed alpha
Helix 36
AD9
B
317 326Right-handed alpha
Helix 37
AE1
B
330 335Right-handed alpha
Helix 38
AE2
B
346 351Right-handed alpha
Helix 39
AE3
D
8 25Right-handed alpha
Helix 40
AE4
D
31 41Right-handed alpha
Helix 41
AE5
D
49 56Right-handed alpha
Helix 42
AE6
D
61 74Right-handed alpha
Helix 43
AE7
D
89 106Right-handed alpha
Helix 44
AE8
D
112 121Right-handed alpha
Helix 45
AE9
D
123 132Right-handed alpha
Helix 46
AF1
D
136 149Right-handed alpha
Helix 47
AF2
D
165 170Right-handed alpha
Helix 48
AF3
D
174 180Right-handed alpha
Helix 49
AF4
D
189 201Right-handed alpha
Helix 50
AF5
D
218 231Right-handed alpha
Helix 51
AF6
D
247 253Right-handed alpha
Helix 52
AF7
D
260 274Right-handed alpha
Helix 53
AF8
D
286 291Right-handed alpha
Helix 54
AF9
D
301 306Right-handed alpha
Helix 55
AG1
D
317 328Right-handed alpha
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There are 6 sheets in PDB entry 5WBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
87 88parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
242 246anti-parallel
Strand 3
A
279 283parallel
Strand 4
A
311 316parallel
Strand 5
A
207 211parallel
Strand 6
A
335 339parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
87 88parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
242 246anti-parallel
Strand 3
B
279 283parallel
Strand 4
B
311 316parallel
Strand 5
B
209 211parallel
Strand 6
B
338 339parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
29 30first strand
Strand 2
D
87 88parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 173first strand
Strand 2
D
242 246anti-parallel
Strand 3
D
279 283parallel
Strand 4
D
311 315parallel
Strand 5
D
207 211parallel
Strand 6
D
335 339parallel
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