Analysis of interatomic Contacts of Structural Units in PDB entry:
5WBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5WBY entry

There are 2 chains in PDB entry 5WBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
GLU 1385TRP 2549
D
VAL 8MET 185
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are109 helices in PDB entry 5WBY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
1385 1407Right-handed alpha
Helix 2
AA2
B
1409 1422Right-handed alpha
Helix 3
AA3
B
1425 1440Right-handed alpha
Helix 4
AA4
B
1445 1453Right-handed alpha
Helix 5
AA5
B
1455 1470Right-handed alpha
Helix 6
AA6
B
1473 1488Right-handed alpha
Helix 7
AA7
B
1489 1499Right-handed alpha
Helix 8
AA8
B
1505 1524Right-handed alpha
Helix 9
AA9
B
1525 1536Right-handed alpha
Helix 10
AB1
B
1540 1554Right-handed alpha
Helix 11
AB2
B
1556 1578Right-handed alpha
Helix 12
AB3
B
1586 1606Right-handed alpha
Helix 13
AB4
B
1612 1625Right-handed alpha
Helix 14
AB5
B
1629 1641Right-handed alpha
Helix 15
AB6
B
1649 1664Right-handed alpha
Helix 16
AB7
B
1665 1678Right-handed alpha
Helix 17
AB8
B
1693 1707Right-handed alpha
Helix 18
AB9
B
1709 1730Right-handed alpha
Helix 19
AC1
B
1737 1762Right-handed alpha
Helix 20
AC2
B
1767 1783Right-handed alpha
Helix 21
AC3
B
1786 1814Right-handed alpha
Helix 22
AC4
B
1868 1894Right-handed alpha
Helix 23
AC5
B
1899 1914Right-handed alpha
Helix 24
AC6
B
1916 1930Right-handed alpha
Helix 25
AC7
B
1931 1937Right-handed 310
Helix 26
AC8
B
1938 1944Right-handed alpha
Helix 27
AC9
B
1950 1967Right-handed alpha
Helix 28
AD1
B
1968 1971Right-handed 310
Helix 29
AD2
B
1972 1981Right-handed alpha
Helix 30
AD3
B
1984 2021Right-handed alpha
Helix 31
AD4
B
2022 2039Right-handed alpha
Helix 32
AD5
B
2043 2060Right-handed alpha
Helix 33
AD6
B
2064 2074Right-handed alpha
Helix 34
AD7
B
2074 2092Right-handed alpha
Helix 35
AD8
B
2093 2115Right-handed alpha
Helix 36
AD9
B
2123 2127Right-handed alpha
Helix 37
AE1
B
2127 2133Right-handed alpha
Helix 38
AE2
B
2192 2212Right-handed alpha
Helix 39
AE3
B
2212 2218Right-handed alpha
Helix 40
AE4
B
2246 2257Right-handed alpha
Helix 41
AE5
B
2262 2272Right-handed alpha
Helix 42
AE6
B
2274 2278Right-handed 310
Helix 43
AE7
B
2279 2293Right-handed alpha
Helix 44
AE8
B
2297 2307Right-handed alpha
Helix 45
AE9
B
2309 2335Right-handed alpha
Helix 46
AF1
B
2363 2368Right-handed alpha
Helix 47
AF2
B
2380 2387Right-handed alpha
Helix 48
AF3
B
2394 2410Right-handed alpha
Helix 49
AF4
B
2410 2423Right-handed alpha
Helix 50
AF5
B
2428 2433Right-handed alpha
Helix 51
AF6
B
2434 2436Right-handed 310
Helix 52
AF7
B
2493 2510Right-handed alpha
Helix 53
AF8
B
2520 2534Right-handed alpha
Helix 54
AF9
B
2534 2541Right-handed alpha
Helix 55
AG1
B
2542 2546Right-handed 310
Helix 56
AG2
A
1386 1407Right-handed alpha
Helix 57
AG3
A
1409 1422Right-handed alpha
Helix 58
AG4
A
1425 1440Right-handed alpha
Helix 59
AG5
A
1445 1453Right-handed alpha
Helix 60
AG6
A
1455 1470Right-handed alpha
Helix 61
AG7
A
1473 1488Right-handed alpha
Helix 62
AG8
A
1489 1499Right-handed alpha
Helix 63
AG9
A
1505 1524Right-handed alpha
Helix 64
AH1
A
1525 1536Right-handed alpha
Helix 65
AH2
A
1540 1554Right-handed alpha
Helix 66
AH3
A
1556 1578Right-handed alpha
Helix 67
AH4
A
1586 1603Right-handed alpha
Helix 68
AH5
A
1613 1625Right-handed alpha
Helix 69
AH6
A
1629 1641Right-handed alpha
Helix 70
AH7
A
1649 1664Right-handed alpha
Helix 71
AH8
A
1665 1678Right-handed alpha
Helix 72
AH9
A
1693 1707Right-handed alpha
Helix 73
AI1
A
1709 1730Right-handed alpha
Helix 74
AI2
A
1737 1762Right-handed alpha
Helix 75
AI3
A
1767 1783Right-handed alpha
Helix 76
AI4
A
1786 1814Right-handed alpha
Helix 77
AI5
A
1868 1894Right-handed alpha
Helix 78
AI6
A
1899 1914Right-handed alpha
Helix 79
AI7
A
1916 1930Right-handed alpha
Helix 80
AI8
A
1931 1937Right-handed 310
Helix 81
AI9
A
1938 1944Right-handed alpha
Helix 82
AJ1
A
1950 1967Right-handed alpha
Helix 83
AJ2
A
1972 1980Right-handed alpha
Helix 84
AJ3
A
1984 2021Right-handed alpha
Helix 85
AJ4
A
2022 2039Right-handed alpha
Helix 86
AJ5
A
2043 2060Right-handed alpha
Helix 87
AJ6
A
2064 2074Right-handed alpha
Helix 88
AJ7
A
2074 2092Right-handed alpha
Helix 89
AJ8
A
2093 2115Right-handed alpha
Helix 90
AJ9
A
2123 2127Right-handed alpha
Helix 91
AK1
A
2127 2133Right-handed alpha
Helix 92
AK2
A
2192 2212Right-handed alpha
Helix 93
AK3
A
2212 2218Right-handed alpha
Helix 94
AK4
A
2246 2257Right-handed alpha
Helix 95
AK5
A
2262 2272Right-handed alpha
Helix 96
AK6
A
2274 2278Right-handed 310
Helix 97
AK7
A
2279 2293Right-handed alpha
Helix 98
AK8
A
2297 2307Right-handed alpha
Helix 99
AK9
A
2309 2335Right-handed alpha
Helix 100
AL1
A
2363 2368Right-handed alpha
Helix 101
AL2
A
2380 2387Right-handed alpha
Helix 102
AL3
A
2394 2410Right-handed alpha
Helix 103
AL4
A
2410 2423Right-handed alpha
Helix 104
AL5
A
2428 2433Right-handed alpha
Helix 105
AL6
A
2434 2436Right-handed 310
Helix 106
AL7
A
2493 2510Right-handed alpha
Helix 107
AL8
A
2520 2534Right-handed alpha
Helix 108
AL9
A
2534 2541Right-handed alpha
Helix 109
AM1
A
2542 2546Right-handed 310
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There are 20 sheets in PDB entry 5WBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2120 2122first strand
Strand 2
B
2159 2162anti-parallel
Strand 3
B
2170 2176anti-parallel
Strand 4
B
2153 2156anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2120 2122first strand
Strand 2
B
2159 2162anti-parallel
Strand 3
B
2170 2176anti-parallel
Strand 4
B
2181 2187anti-parallel
Strand 5
B
2235 2238anti-parallel
Strand 6
B
2227 2229anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2243 2245first strand
Strand 2
B
2344 2347anti-parallel
Strand 3
B
2353 2355anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
34 39first strand
Strand 2
D
23 27anti-parallel
Strand 3
D
13 19anti-parallel
Strand 4
D
315 322anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
47 50first strand
Strand 2
D
56 60anti-parallel
Strand 3
D
65 69anti-parallel
Strand 4
D
77 80anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
88 93first strand
Strand 2
D
99 104anti-parallel
Strand 3
D
108 113anti-parallel
Strand 4
D
123 126anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
131 136first strand
Strand 2
D
142 147anti-parallel
Strand 3
D
152 156anti-parallel
Strand 4
D
162 166anti-parallel
Strand 5
P
190 191parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
173 178first strand
Strand 2
D
184 189anti-parallel
Strand 3
D
194 199anti-parallel
Strand 4
D
210 216anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
223 228first strand
Strand 2
D
234 239anti-parallel
Strand 3
D
243 248anti-parallel
Strand 4
D
254 259anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
273 278first strand
Strand 2
D
284 289anti-parallel
Strand 3
D
293 298anti-parallel
Strand 4
D
304 309anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2120 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2176anti-parallel
Strand 4
A
2153 2156anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2120 2122first strand
Strand 2
A
2159 2162anti-parallel
Strand 3
A
2170 2176anti-parallel
Strand 4
A
2181 2187anti-parallel
Strand 5
A
2235 2238anti-parallel
Strand 6
A
2227 2229anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
2243 2245first strand
Strand 2
A
2344 2347anti-parallel
Strand 3
A
2353 2355anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
34 39first strand
Strand 2
C
23 27anti-parallel
Strand 3
C
13 19anti-parallel
Strand 4
C
315 322anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 50first strand
Strand 2
C
56 60anti-parallel
Strand 3
C
65 69anti-parallel
Strand 4
C
77 80anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
88 93first strand
Strand 2
C
99 104anti-parallel
Strand 3
C
108 113anti-parallel
Strand 4
C
123 126anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
131 136first strand
Strand 2
C
142 147anti-parallel
Strand 3
C
152 156anti-parallel
Strand 4
C
162 166anti-parallel
Strand 5
O
190 191parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
173 178first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
194 199anti-parallel
Strand 4
C
210 216anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
223 228first strand
Strand 2
C
234 239anti-parallel
Strand 3
C
243 248anti-parallel
Strand 4
C
254 259anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
293 298anti-parallel
Strand 4
C
304 309anti-parallel
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